PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089923.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 623aa    MW: 69479.8 Da    PI: 9.3508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089923.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-1922107899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s +l+s rl +p kf+++++gk+ +   ++le +sg++W+v l   ++ g  +l  GW  Fv+++ ++ gDf++F++dg+  f  +v+vf++
  XP_010089923.1  22 SANLSSERLKIPTKFMKRMEGKTSG--SVSLEGPSGNTWQVDL--VQQNGDLFLHYGWPAFVRDHFVECGDFLIFRYDGDLHF--TVQVFDQ 107
                     778999*************999666..6***************..888889**************************997777..9999997 PP
2B352.68.6e-17266357296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++++ +v+ s  l +p +f  +h   ++++++++l++++g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+g+ ef+ +  
  XP_010089923.1 266 MRTMKSFNVSGSYTLNIPYQFSMAHL--PNCKVKIVLQNLKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKIGDICIFELVGECEFRVH-- 356
                     56677778888899*******98996..4699****************9445555667999*************************9999554.. PP

                     E CS
              B3  96 v 96 
                     +
  XP_010089923.1 357 I 357
                     4 PP
3B351.81.5e-16499591196
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k++++ + + s  l +p +f  +h  +     +++++l++++g+ W+v+    +k++ ++++ +GW  Fv+an++k gD+++F+l+g  +fe+
  XP_010089923.1 499 FVKIMKKFNISGSYTLKIPYQFSIAHlpN----YKTEVVLRNSKGECWTVNSVPdSKGRLMHTFCGGWMAFVRANDVKIGDICIFELVG--KFEM 587
                     778887878888889*******9999433....4468**************95545555559999*********************987..8999 PP

                     EEEE CS
              B3  93 vvkv 96 
                     +v++
  XP_010089923.1 588 RVHI 591
                     9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-249110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-1915106No hitNo description
PROSITE profilePS5086314.64915108IPR003340B3 DNA binding domain
SMARTSM010198.2E-1117108IPR003340B3 DNA binding domain
PfamPF023621.9E-1622107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-23257359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24258359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-20263358No hitNo description
SMARTSM010192.2E-14265361IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296265361IPR003340B3 DNA binding domain
PfamPF023621.3E-13265357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-22491592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23492592IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-21497591No hitNo description
SMARTSM010199.5E-13499595IPR003340B3 DNA binding domain
PfamPF023622.4E-14499591IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112499595IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEIVEARKMS SGRRPHFFAF YSANLSSERL KIPTKFMKRM EGKTSGSVSL EGPSGNTWQV  60
DLVQQNGDLF LHYGWPAFVR DHFVECGDFL IFRYDGDLHF TVQVFDQSAC EKEAAFLSEC  120
NQDISDKNLR QKRERGDCMS SSDKIVQGVL KKMRESSSQL YSERIHLCGE KVCHCDGVLA  180
TKTCEQANFS IDSHQCASSP KSYALPSQSE NCNEKPALDI VLFKTKAIQN ISGKGDSFNV  240
NGRVCVQMTA AHEAAQSFTS CFPFFMRTMK SFNVSGSYTL NIPYQFSMAH LPNCKVKIVL  300
QNLKGESWTV NSVPSTRVHT SHTLCGGWMA FVRYNDIKIG DICIFELVGE CEFRVHILGV  360
GKEGVDYQSG KVSSNRLGAG HGVTSHKSFK AVPKKMRGNS SKVHMKSIKM LDVSDKKVSK  420
KLLEAAFPND AKKHGNTSKA LTKVALCSQS KAVNKKLVVH RSRGIEDELG SQARSGLRMM  480
LALDEERVAR SFTSCFPNFV KIMKKFNISG SYTLKIPYQF SIAHLPNYKT EVVLRNSKGE  540
CWTVNSVPDS KGRLMHTFCG GWMAFVRAND VKIGDICIFE LVGKFEMRVH ISTVGQRGLD  600
YQGGEVTPNE LALISAANNR LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089923.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089923.10.0B3 domain-containing protein Os01g0723500
TrEMBLW9QJE40.0W9QJE4_9ROSA; B3 domain-containing protein
STRINGXP_010089923.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein