PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 375aa MW: 41424.9 Da PI: 8.6853 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.1 | 5.6e-33 | 60 | 210 | 3 | 127 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaessss 80 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + +++as++++++ XP_010089649.1 60 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLpmplagnfslltpreanAATTASQANEDQGFL 154 78*************************************************************88888888777655433111111222222222 PP TCP 81 sasnsssg.........kaaksaa.kskksqksaasalnlak.esrakararare.rtr 127 +++n+ + + ++++ ++ +++s++ +l k s++ ar++a++ tr XP_010089649.1 155 KNNNN--NmsaiewelgSTSRQNFwTNTTTSTSTS-SDALWKaRSKEVARETANNsTTR 210 22222..2557777776333333322222222222.23333324555555555553333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-31 | 61 | 206 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.469 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MINNSKETEF PPREEGNSSH EIGKVNSSTK VSSSAATSAN PTPWLRLKDP RIVRVSRVFG 60 GKDRHSKVCT IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKHEIDELP 120 PLPMPLAGNF SLLTPREANA ATTASQANED QGFLKNNNNN MSAIEWELGS TSRQNFWTNT 180 TTSTSTSSDA LWKARSKEVA RETANNSTTR SEVEKEEGNH EGSNNLTQRT TNNHPFFPGM 240 LNNIAHMPHG VSYRWEPPNY PLLSHFGGAG HGLNITSQSD QHLQSLNVMS LQPSTLSLST 300 GSPYTTTTQT YFPSHSAAAS GVELVDSRQV NHFHMLSSNV VQNLLPNTIR PFHFGANNSK 360 LVCYPPNDNG SDQQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089649.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | W9QTL1 | 0.0 | W9QTL1_9ROSA; Uncharacterized protein | ||||
STRING | XP_010089649.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-46 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21403909 |