PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14347.6 Da PI: 8.4759 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.5e-10 | 8 | 98 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 lt sdv ++ l++pk+ + + +++ +++++l d g We+++ +r+k++ ++ ++GW +Fv+ +gL +gD+v++ +++ XP_010089596.1 8 LTESDVRAK--LSVPKEWWDIIirplfgdELDRRREIELWAVDGVGMFWEFRCAVRQKGRYkkpVLQSDGWLKFVNYKGLGVGDMVILDTVEN 98 555666655..899999985559999999888899999999999*********8744444456567779******************996643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.76E-12 | 6 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-11 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.38E-7 | 8 | 93 | No hit | No description |
Pfam | PF02362 | 1.9E-8 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MAGLPKWLTE SDVRAKLSVP KEWWDIIIRP LFGDELDRRR EIELWAVDGV GMFWEFRCAV 60 RQKGRYKKPV LQSDGWLKFV NYKGLGVGDM VILDTVENQF RGTRFLLRAC KYDADGQCWF 120 DV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089596.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9QIC0 | 2e-83 | W9QIC0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010089596.1 | 4e-84 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
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Entrez Gene | 21403856 |