PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089411.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Trihelix

Protein Properties

Length: 140aa MW: 15757.2 Da PI: 6.2528

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089411.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.3	8.4e-13	1	63	17	78
trihelix 17 meerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 m++r+++g +++ lWe++++km+ g+ r+ +C+ekwe++n++y k + +++++++ XP_010089411.1 1 MDSRFSQGGfSEEVLWEDIAAKMACLGYDRNGFMCREKWESINNEYLKKSSKLEMSSKKRKEN 63 56777775437899********************************99887777665555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.50E-17	1	49	No hit	No description
Pfam	PF13837	1.3E-8	2	53	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MDSRFSQGGF SEEVLWEDIA AKMACLGYDR NGFMCREKWE SINNEYLKKS SKLEMSSKKR 60 KENSRGYNNN ESSTSLYNHG GYNCDQMNDG TANSSPSPSN ANVRSTTHDH SCFPAFLIGE 120 GSENLWENYG LKINKGGQNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089411.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089408.1	1e-93	trihelix transcription factor PTL
Swissprot	Q9LZS0	2e-21	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	W9QSZ5	1e-99	W9QSZ5_9ROSA; Uncharacterized protein
STRING	XP_010089411.1	1e-100	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21864	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-16	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	21396968

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]