PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089247.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 493aa    MW: 53334.9 Da    PI: 8.318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089247.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15317362555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  XP_010089247.1 317 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 362
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-18310372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19310373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.917312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-17317366No hitNo description
SMARTSM003531.5E-18318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSQCVPSWDL DDSPPARLPL RSRSHSIAPH DVPALLDYEV AELTWENGQI AMHGLGPRRV  60
PNKLLTNTTS TTTATPTTNS HACKYTTATA TTAWEKPSAG GTLESIVNQA TRSSFPHKPP  120
SSANAELVPW FDHHHNAAAA AMTTNMDAQV PCSNRHHHHN DVVSRRPSAR AGGGGVNIGS  180
LYTQVSSCSG AATRDENNNA AAGQQMKRAR VAARVPPEWS VSGTSGSHQV TMDQYSCERD  240
FGVGFMTSTS LGSPENASSG KPSTKAATAT TTAADDHDSV CHSRLQASDE EEEEEDKKKG  300
SGKSSVSTKR SRAAAIHNQS ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIDYLKQ  360
LQAQVQMMSR MNMPAMMLPV AMQQQLQLSM MSHMGMGMGM GMGMGMDMNT MGRPNLHGIS  420
PAVLHPNPFM TMAQWDGSGT VDGRLQPQMA AVIPDPLSQF FACQSQPMTT EAYSRMVAMY  480
QQLHQPPASS SKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320325ERKRRD
2321326RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089247.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032923.10.0transcription factor UNE10
SwissprotQ8GZ381e-111UNE10_ARATH; Transcription factor UNE10
TrEMBLW9R3R40.0W9R3R4_9ROSA; Transcription factor UNE10
STRINGXP_010089247.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]