PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Dof | ||||||||
Protein Properties | Length: 496aa MW: 55191.4 Da PI: 6.865 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 9.9e-38 | 116 | 175 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+r Wt+GG++r+vPvG+grrknk+ XP_010089192.1 116 PDKILPCPRCKSSDTKFCYFNNYNVNQPRHFCKNCQRLWTAGGTMRDVPVGAGRRKNKHL 175 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 103 | 173 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-31 | 118 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.857 | 120 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 122 | 158 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MSENNDKYNI SENGNNMDQG IKLFGRTIPL YGVQISSAKS EAYHFPVLAV AEPLEDEREQ 60 PSPLKDSCSD VTKAELDSLN AENSSEQERS HGFRDNKDEH TETNNNSEQE KVFKKPDKIL 120 PCPRCKSSDT KFCYFNNYNV NQPRHFCKNC QRLWTAGGTM RDVPVGAGRR KNKHLASHFR 180 QMLASGDRTQ ADRLETTNSG QSQLLTYDES STGKVLRFGP DQAPLFEHKE TMLTLGNAKG 240 FIEMNSVNYP EKEQDPPPAP SALTQSGYER SELHENPMQG YVDEPASRPL ECQSIPSLVL 300 SRNPGWNNAS SAVKSHYSRH FGASNSSALN QVQWFPTHVL AVPSSFPSTI PLQFVPASYW 360 SCIPVWTSPT GNMSLSAGSF SSMSPSSSAI NNRYMGNMSP TFGKHSRDSE SIDSEPPEMR 420 VSAPKILKID DPNEPLRNPI QTRFGIKLDE DDLVVKGSVH KKLIHKIEGK DHVHSSPVMT 480 ANPAAISRSH TFRESA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024032061.1 | 0.0 | cyclic dof factor 3 | ||||
TrEMBL | W9SLB3 | 0.0 | W9SLB3_9ROSA; Dof zinc finger protein | ||||
STRING | XP_010089192.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-39 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21386532 |