PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YC | ||||||||
Protein Properties | Length: 132aa MW: 14245.3 Da PI: 6.5028 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 94.4 | 9.5e-30 | 18 | 100 | 18 | 96 |
NF-YC 18 nhelPlarikkilk....adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 h+lPlarikki+k + e+vkmis +aPv+l+kacelfi elt +sw + + krr ++k+d+a+av +td fdfl v XP_010089137.1 18 AHSLPLARIKKIMKrsssSGEEVKMISGDAPVVLAKACELFINELTRKSWTMTLQGKRRIVHKNDVASAVVSTDLFDFLEGLV 100 599***********4443468**********************************************************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-29 | 17 | 87 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.59E-23 | 17 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-18 | 20 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MRQAGIYSGI RFGGGSGAHS LPLARIKKIM KRSSSSGEEV KMISGDAPVV LAKACELFIN 60 ELTRKSWTMT LQGKRRIVHK NDVASAVVST DLFDFLEGLV SDCCDHCVPA GDDDHQIIIN 120 NAPVEGETVL ES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-29 | 19 | 100 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089137.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089137.1 | 2e-94 | nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q9ZVL3 | 7e-28 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | W9QHF5 | 6e-93 | W9QHF5_9ROSA; Nuclear transcription factor Y subunit C-3 | ||||
STRING | XP_010089137.1 | 9e-94 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 9e-30 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21407057 |