PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089023.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 321aa    MW: 35984.8 Da    PI: 9.0118
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089023.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1619114299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                     fk+   +d+l+ + l +p  fa+++ ++++++   ++   +gr+W+v++++   +  ++  ++ GWk F+k+n+Lk+gD++vF l+++ ++  + 
  XP_010089023.1  19 FKII-LEDTLRDNTLNVPYLFATKYLIDERGH---VILKVHGRTWSVNYSFgiYGINNKAKFEYGWKVFAKDNDLKVGDVCVFVLTKSiEKL-FE 108
                     4444.5899999*************8887774...55567*********999855555567999*********************9996555.89 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v++fr+
  XP_010089023.1 109 VSIFRE 114
                     999986 PP
2B334.34.1e-111792453598
                     EEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  35 tltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +l  ++grsW+v +++r k ++   + +  GW  F+++n+L+egD ++F++++r++ +++v++++
  XP_010089023.1 179 DAVLWVSDGRSWSVLYKVREKLKQspvTNFCHGWFAFARDNRLEEGDRCTFEVTNRNDISFKVSIVK 245
                     56777789********9966555545566669********************998898888998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2215116IPR015300DNA-binding pseudobarrel domain
CDDcd100177.65E-2016113No hitNo description
SuperFamilySSF1019365.3E-1916115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.11217115IPR003340B3 DNA binding domain
SMARTSM010191.0E-1118115IPR003340B3 DNA binding domain
PfamPF023622.7E-1420114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15154249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-12155249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-11159245No hitNo description
SMARTSM010190.44161247IPR003340B3 DNA binding domain
PfamPF023623.0E-9170246IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166187247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MACSRRENDL QTKISPRFFK IILEDTLRDN TLNVPYLFAT KYLIDERGHV ILKVHGRTWS  60
VNYSFGIYGI NNKAKFEYGW KVFAKDNDLK VGDVCVFVLT KSIEKLFEVS IFRENGRANS  120
SVSPAVDNAA TCLEGVPDNG NARARAPEMA GSCFQSENPS FTVSMQASYT RLKSQFEGDA  180
VLWVSDGRSW SVLYKVREKL KQSPVTNFCH GWFAFARDNR LEEGDRCTFE VTNRNDISFK  240
VSIVKANGCL PKASEKATKP ANLKRNASVK FKSTSMVILM DPIIKEEQEE TAVDPEGSEE  300
NTALIIAQRP SSSRASRASK A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9QS040.0W9QS04_9ROSA; Putative B3 domain-containing protein REM15
STRINGXP_010089023.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.18e-11related to vernalization1 1