PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089022.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 594aa    MW: 68931.9 Da    PI: 10.4737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089022.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15208305498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     v +ps+v+k   ++lp+kfa+ + ++  +  + +l+ ++g +W ++++      ++++g+ + +  W++F+++n+Lk+ D++vF+l++ +e +++
  XP_010089022.1 208 VIKPSHVGKYFDMCLPRKFADGFLKN--KCLDAVLKLSDGGTWPIRFRSrrcddERRRGARFEKPSWEKFARDNNLKVADTCVFELINGNEMSFK 300
                     6789****************888544..5569***************886676444444477889********************9955555558 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v++++
  XP_010089022.1 301 VSILK 305
                     88876 PP
2B341.42.5e-135315941782
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      +p +f++ +++k e++ t++l++ +grsW vk++++ ++ +  l++GW++Fv+an +k +D++vF
  XP_010089022.1 531 GIPTSFFKMYMNKLERGSTVMLQH-KGRSWPVKFCVDERPTA-RLSTGWSKFVNANAIKLRDVCVF 594
                     69********77777776777666.*********99888855.7999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.659149IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-11356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-11356IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-7447No hitNo description
CDDcd100174.56E-15203305No hitNo description
SuperFamilySSF1019365.3E-17204303IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731205307IPR003340B3 DNA binding domain
SMARTSM010192.2E-13205307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17206307IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-13208305IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-5462510IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266515594IPR003340B3 DNA binding domain
SMARTSM010190.16520594IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-12529594IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-13530594IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-10531594IPR003340B3 DNA binding domain
CDDcd100172.35E-11532594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MELRKSNGRF CLQKGWPEFV KYYSIGFGHF LVFRYEGNSR FHACIFDTTT VEIEYPLIRA  60
HSDGPKIEEI KDDGSVEVLE DLSPYPRKRK SSPLPCSQPH KKFRTSPIGE TEIKGTRSNE  120
RILKNSMRNG DLHHSKSMRG MRKFFLLSFK KLIFWYLNKL LFPCRVVFLY CLFSFILFPV  180
SAEDGKGDKS IMPRWRLSEV KSFTYKVVIK PSHVGKYFDM CLPRKFADGF LKNKCLDAVL  240
KLSDGGTWPI RFRSRRCDDE RRRGARFEKP SWEKFARDNN LKVADTCVFE LINGNEMSFK  300
VSILKADLDS HPSHDQTNSL KPKRNVKVKT ECDCTSKHQE ETKVEPGKFW QGQVTCVPKF  360
SGDSRATEAA SRFSSKNPFF KKLITSSYLH TQSMPSSGPH CGRGDLGRGD LERPEWAIQS  420
GPPWTSASEA WWNVKILIES HIAKFVRRQI EMGRKPRPLK RYPSIFKVLI DDFSNKLMIP  480
VAFVKHFDGK IPRRCLLWSP AERFWNVNVE NFGRIPAIRL TRVRKEKYAQ GIPTSFFKMY  540
MNKLERGSTV MLQHKGRSWP VKFCVDERPT ARLSTGWSKF VNANAIKLRD VCVF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030727.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLW9QPF10.0W9QPF1_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010089022.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-12B3 family protein