PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089002.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 1072aa    MW: 123420 Da    PI: 9.8873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089002.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-114254893595
                     EEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  35 tltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + tl+ ++ r+W vkl+ rk   r     +l+kGWk+F+ +n+Lk+ D+++F+l+++++  ++v+
  XP_010089002.1 425 DATLYVSHERVWIVKLNARKIAMRsirvSFLRKGWKDFAVDNDLKVDDVCIFELVNQRKMIFKVT 489
                     57889999********87555555666799***********************985433333554 PP
2B355.21.3e-17564652599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++   ++ +   +p kf++++g  ++ s  + ++ +sg +W+++l  rk+ gr+ l+kGW eFvk   +  g f+vF+++g+s+f  +  +f++
  XP_010089002.1 564 IKRQPRSNMCSRLIPTKFVKKYG--ETLSNSVFVKLPSGSEWKMEL--RKSNGRFCLQKGWPEFVKYYSIGFGHFLVFRYEGNSRF--HACIFDT 652
                     5556667778899*********9..458999***************..**********************************9999..8888876 PP
3B347.82.6e-15812909498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     v +ps+v+k   ++lp+kfa+ + ++  +  + +l+ ++g +W ++++      ++++g+ + +  W++F+++n+Lk+ D++vF+l++ +e +++
  XP_010089002.1 812 VIKPSHVGKYFDMCLPRKFADGFLKN--KCLDAVLKLSDGGTWPIRFRSrrcddERRRGARFEKPSWEKFARDNNLKVADTCVFELINGNEMSFK 904
                     6789****************888544..5569***************886676444444477889********************9955555558 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v++++
  XP_010089002.1 905 VSILK 909
                     88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-51580IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-11198312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-11199321IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.45203314IPR003340B3 DNA binding domain
PROSITE profilePS508638.614204314IPR003340B3 DNA binding domain
SMARTSM010190.0016405494IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-13406492IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-13406492IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-11419492No hitNo description
PfamPF023625.2E-9425487IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306427494IPR003340B3 DNA binding domain
SMARTSM010196.5E-11560653IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352560653IPR003340B3 DNA binding domain
PfamPF023626.8E-15562651IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-20562660IPR015300DNA-binding pseudobarrel domain
CDDcd100179.30E-16570651No hitNo description
Gene3DG3DSA:2.40.330.102.1E-19573652IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-15807909No hitNo description
SuperFamilySSF1019361.24E-16808907IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-13809911IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731809911IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-17810911IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-13812909IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-139441039IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-109451038IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-69501035No hitNo description
SMARTSM010190.219691052IPR003340B3 DNA binding domain
PROSITE profilePS508637.9099811058IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MACTGPREND VQKKFSPPSP HFFKIIFIDT LRDNKLQIPN RIVNKCGGTL SIPVLLKLPC  60
GLKWKYEGNS QFHVLIFDKS TTEIDYPSNP NWIVKHNIGR SQPQEVKEEE DDDSVEILES  120
FSPFPKRREK SQLTCSWPRK RMKTGPDHDE TQRGSSHPRS KGKFRMQILE ANTSQEVTMR  180
PSSSGDIRAS EAANKFFSTN PYFQVSLQSS HFKPTNSRVR VPTAFARTYY EERTQNCESS  240
KDSETIYDKL WKDNIRSSNY YDTEWCKMAY GIGDIWLCKG WPEFVQHFSL ENGQALFFKY  300
KGCSQFDVVI IGVTGLEIDY SITNSTQVIE SDIDDGDNDD DDGDGGSPCL KEEEEPTTPF  360
PQHARTKSTH DGEPSVLGRK QRSLTMAEKA KALSRTEDFM SQSPYFKAVV RTDFWMECLF  420
DITDDATLYV SHERVWIVKL NARKIAMRSI RVSFLRKGWK DFAVDNDLKV DDVCIFELVN  480
QRKMIFKVTI SRDGDFQNSQ QSHAGKSAVN QDHPKKSLSA RDKTPSTSYK AETCNMRPSM  540
NHVRRKDPNA IAKRKSMLNY AKEIKRQPRS NMCSRLIPTK FVKKYGETLS NSVFVKLPSG  600
SEWKMELRKS NGRFCLQKGW PEFVKYYSIG FGHFLVFRYE GNSRFHACIF DTTTVEIEYP  660
LIRAHSDGPK IEEIKDDGSV EVLEDLSPYP RKRKSSPLPC SQPHKKFRTS PIGETEIKGT  720
RSNERILKNS MRNGDLHHSK SMRGMRKFFL LSFKKLIFWY LNKLLFPCRV VFLYCLFSFI  780
LFPVSAEDGN GDKSIMPRWR LSEVKSFTYK VVIKPSHVGK YFDMCLPRKF ADGFLKNKCL  840
DAVLKLSDGG TWPIRFRSRR CDDERRRGAR FEKPSWEKFA RDNNLKVADT CVFELINGNE  900
MSFKVSILKA DLDSHPSHGK FWQGQVTRVL KFSGDSRATD AASRFSSKNP FFKKLITSSY  960
LHTQDQQITL KFKLSCCVQR LPNYFGRSYF GKKTQNITLQ TGKNSWSVTI VYNAPHSYLF  1020
SRGWPTFARE NSLRPEHALL RPTLRKGRLG KARVGQPEWA AVDVGVGSVV EC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030825.10.0B3 domain-containing transcription factor VRN1
TrEMBLW9QPD00.0W9QPD0_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010089002.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein