PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088845.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Trihelix

Protein Properties

Length: 356aa MW: 41450.6 Da PI: 4.4547

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088845.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.5e-15	107	191	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ v +L+e+ +m +l+r++l+ +W+evs+k++e +++r+ qC++ +++l+++ykk+k+++ + +ss+++yf++++ XP_010088845.1 107 WTERAVFVLLEVWGNMFVQLGRRSLRFEDWQEVSEKVAEvSKISRTEMQCRNMLDSLKRKYKKEKARMDEL-GLKSSKWAYFKKMD 191 ***********************************772678**********************96.89999******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-17	105	191	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDGIEDDDSR YSRKSYPLNF SNPRKLRTRD NIPYAGPIPT RYEEKDDEDE ELDELDEEMD 60 RQDDEEFVDF ERHPKKRKVK NFVPSFEFAP RAKSSYGVRS LGVEKDWTER AVFVLLEVWG 120 NMFVQLGRRS LRFEDWQEVS EKVAEVSKIS RTEMQCRNML DSLKRKYKKE KARMDELGLK 180 SSKWAYFKKM DILMASPARQ NHGLACGVDS GEFVFANTRV YLDRSNRFDE MRDSPVESEN 240 SDEEDDNGND SDGLPPRRVR SGGGGNGESS SSFRVLADSI QKFGEIYGKI ESNKRQQMME 300 LENMRRDFYR ELELQKKQIL ERTQAEIAKI QENDDEDEDG VDDSDDSGDS AEDLSE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDGIEDDDSR YSRKSYPLNF SNPRKLRTRD NIPYAGPIPT RYEEKDDEDE ELDELDEEMD  60
RQDDEEFVDF ERHPKKRKVK NFVPSFEFAP RAKSSYGVRS LGVEKDWTER AVFVLLEVWG  120
NMFVQLGRRS LRFEDWQEVS EKVAEVSKIS RTEMQCRNML DSLKRKYKKE KARMDELGLK  180
SSKWAYFKKM DILMASPARQ NHGLACGVDS GEFVFANTRV YLDRSNRFDE MRDSPVESEN  240
SDEEDDNGND SDGLPPRRVR SGGGGNGESS SSFRVLADSI QKFGEIYGKI ESNKRQQMME  300
LENMRRDFYR ELELQKKQIL ERTQAEIAKI QENDDEDEDG VDDSDDSGDS AEDLSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088845.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	5e-45	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088845.1	0.0	trihelix transcription factor ASIL1
TrEMBL	W9R2K4	0.0	W9R2K4_9ROSA; Uncharacterized protein
STRING	XP_010088845.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-80	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	21403708