PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010088702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 47537 Da PI: 8.8546 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.2 | 1.6e-49 | 38 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_010088702.1 38 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 131 79***************************.89***************8778899***************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl XP_010088702.1 132 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 163 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-55 | 37 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.48 | 37 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 39 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MAIAASSNST ITTTTMSQEN ESNNNNKTTD DHEHDMVMPG FRFHPTEEEL VEFYLRRKVE 60 GKRFNVELIT FLDLYRYDPW ELPALAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA 120 TGADRMIRSE NFRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPQHETER YQKAEISLCR 180 VYKRAGVEDH PSLPRSLPSR ASSSRAAADN KKQYPNNAME KLQTFGVHQV LPPPPPPPHQ 240 FEVENTNETD GSSSSDVAAA GTKGLSKRKA YRGSIASPIA QPAAANTSME EEVAMLSAQQ 300 PKQFCPTLFS SGSSSTPPNS IDDLHRLIHN YQQAPSSSTT SSSNANIIVS HHHHSQQHYF 360 NQFHPMPLPL PVPVPPQQQQ VALNPLSNFL PTAFSDRLWE WNPFPDQANR DGQYSNNPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 39 | 184 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 39 | 184 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 39 | 184 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 39 | 184 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-54 | 39 | 184 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 39 | 184 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010088702.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088702.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | W9R289 | 0.0 | W9R289_9ROSA; Putative NAC domain-containing protein 94 | ||||
STRING | XP_010088702.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-108 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399534 |