PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088560.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 596aa    MW: 65456.1 Da    PI: 6.9032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088560.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093934301954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_010088560.1 393 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 430
                     554459******************************88 PP
2BELL109.32.3e-35261329472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++kkk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  XP_010088560.1 261 EIRKKKSRLISMLDEVYRRYKQYYQQMQAVVTSFEYVAGLGNAAPYANLAVKAMTRHFKCLKNAIMDQL 329
                     899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-46180327IPR006563POX domain
PfamPF075261.2E-40185326IPR006563POX domain
PROSITE profilePS5007112.098371434IPR001356Homeobox domain
SMARTSM003893.4E-10374438IPR001356Homeobox domain
CDDcd000867.40E-13374435No hitNo description
SuperFamilySSF466894.71E-17376441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27377438IPR009057Homeodomain-like
PfamPF059201.1E-18391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VVAAAAEHSP AVNLPGLMLP PPPTPYDPAS LIISSSSDLL  60
TSCTPTTKEE VLNNNSNSSN LMGLTSSSSN FRSPYLDPQF HDINNNPGAF FHYSSQVALQ  120
NDDDQVVVFK PEPLSLSLSS SSYSNSSGNH HHNSLPAIYG SIVAPNDGVS RSSVPLGPFT  180
GYASILKGSR FLKPAQQLLE EFCDVGGGGG GICCEKIAAA DSSLMDPQVE SLSADGSLIV  240
DHDDHDHNRH QLGGSSDIGV EIRKKKSRLI SMLDEVYRRY KQYYQQMQAV VTSFEYVAGL  300
GNAAPYANLA VKAMTRHFKC LKNAIMDQLQ FTNKDSAHAS HGKDEAPMFR NSNRGLYGQR  360
PIHSTGFLEH QPVWRPQRGL PERAVTVLRA WLFEHFLHPY PTDTDKLMLA KQTGLSRSQV  420
SNWFINARVR LWKPMVEEIH MLETRQAQKS AQREDRNANR SSDHMQSANS LASENPSTST  480
HRVQDTSKRT RNELPNMPVG SEEMNLSYET LPSHLQVGAA GMSMAGSGNG VSLTLGLHQN  540
NGIGLSEPFP INAAQRFGLG LEGNSEGYNV MSTFEAQNRH FGRDVIGGQL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16380438563Homeobox protein Meis2
4xrm_B4e-16380438563Homeobox protein Meis2
4xrs_A4e-16380437158Homeobox protein Meis1
4xrs_B4e-16380437158Homeobox protein Meis1
5bng_A4e-16380438159Homeobox protein Meis2
5bng_B4e-16380438159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088560.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-119BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLW9QN790.0W9QN79_9ROSA; BEL1-like homeodomain protein 9
STRINGXP_010088560.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-100TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]