PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010088484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44745.7 Da PI: 6.6524 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.2 | 1.2e-56 | 26 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL++kv ++++++ ++i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ XP_010088484.1 26 LPPGFRFHPTDEEIITCYLTEKVINSNFSA-SAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKG 119 79**************************99.88***************99999*****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grapkgek++Wvmheyrle XP_010088484.1 120 KGCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 153 ********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-64 | 18 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.657 | 26 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 27 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEEGCVVENK GSSEDHHHHH RELIDLPPGF RFHPTDEEII TCYLTEKVIN SNFSASAIGE 60 ADLNKCEPWD LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK 120 GCLVGMKKTL VFYRGRAPKG EKSNWVMHEY RLEGKFSYYN LPKSAKDEWV VCRVFHKNMG 180 INNNKKLAPI PGLLRINSLG VDDMLDCSTT LPPLTDDPPY NSTANYGEND AADFKGSTTA 240 NFNNSASSQG ASHIINYYSL IAPNNNKSVL HHQHQINPIH QNPILYSQII PSSSYDNSSF 300 QRNSNPGYFQ IGSSSTITGQ CKVEQFSVSN QSMVSLSQDT GLSTDNMNNN TTEISSVVSK 360 HDMGSSHNRS SYHDHQDFEG PSSVGPISDI EAFIWDDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-53 | 24 | 178 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-53 | 24 | 178 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-53 | 24 | 178 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-53 | 24 | 178 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-53 | 24 | 178 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-53 | 24 | 178 | 15 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010088484.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088484.1 | 0.0 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 1e-118 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | W9QN11 | 0.0 | W9QN11_9ROSA; NAC domain-containing protein 100 | ||||
STRING | XP_010088484.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-115 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Entrez Gene | 21396856 |
Publications ? help Back to Top | |||
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