PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088228.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YA

Protein Properties

Length: 316aa MW: 34520.1 Da PI: 8.9188

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088228.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.7	3.5e-32	162	218	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk +k+rkpylheSRh hA+rR+Rg+gGrF XP_010088228.1 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKARKPYLHESRHLHAMRRARGCGGRF 218 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.6E-37	160	221	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.436	161	221	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-27	163	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-24	164	186	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	166	186	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.4E-24	195	218	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MPAKAENEDR RSRQSAENVL QSSVYAQPWW REVGNNEKNS KPSFGERPIN GSFENGANGG 60 RLDDGNTLNK KRPPNIVASE SGTDGNNGPP ENHLKTVPSS TTLAAGEHLD PNSQMELVLT 120 PYPYGDPHYS GVLGPYGLPP MVPPHLYGMY PGRMPLPLEM EEEPVYVNAK QYHGILRRRQ 180 SRAKAELEKK AIKARKPYLH ESRHLHAMRR ARGCGGRFLN TKKSENNVTS PTSEKVSNSD 240 TNQSTQSTSD ANVNSTSHQK EGFVPTLSSG NGNGNDHGLS SAYGLLFNDS KEGDCLGQGR 300 ESMQFNGSAH GAIPIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	162	226	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM489759	2e-32	AM489759.1 Petunia x hybrida partial mRNA for YA4 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025824.1	1e-127	nuclear transcription factor Y subunit A-9
Swissprot	Q945M9	1e-42	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	W9R0W5	0.0	W9R0W5_9ROSA; Nuclear transcription factor Y subunit A-9
STRING	XP_010088228.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8962	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	6e-26	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Entrez Gene	21395720

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]