PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088184.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARR-B
Protein Properties Length: 679aa    MW: 73287.5 Da    PI: 7.3133
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088184.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85.1e-28236289155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_010088184.1 236 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 289
                     79*******************.********************************8 PP
2Response_reg77.25.9e-26531611109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++++q+l++  y +v+++++++ al+ll+ek+  +D++l D+ mp+mdG++ll+     e++lp+i+++a g    + + +k G
  XP_010088184.1  53 VLVVDDDTTCLRIVEQMLRRCLY-HVTTCSQATVALKLLREKKggFDVVLSDVHMPDMDGYKLLELVGL-EMDLPVIMMSADGRTRAVMRGIKHG 145
                     89*********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_010088184.1 146 ACDYLIKPIREEELKN 161
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.1E-4150189No hitNo description
SuperFamilySSF521721.85E-3450175IPR011006CheY-like superfamily
SMARTSM004482.0E-2951163IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.67252167IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2353161IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.50E-2754166No hitNo description
PROSITE profilePS5129410.504233292IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-30233294IPR009057Homeodomain-like
SuperFamilySSF466891.79E-19233293IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-24236289IPR006447Myb domain, plants
PfamPF002492.6E-7238287IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAALQRVAQS SVSTAGSSYA ASGKAVLGSS AAVGNFLGGE KVVSDQFPVG LKVLVVDDDT  60
TCLRIVEQML RRCLYHVTTC SQATVALKLL REKKGGFDVV LSDVHMPDMD GYKLLELVGL  120
EMDLPVIMMS ADGRTRAVMR GIKHGACDYL IKPIREEELK NIWQHVVRKK WNENRDFEHS  180
GSMEDNDRPK RVNEDTEYAS SVNEETEGLK GQKKRSNYKE EDDGELENDD PSTSKKPRVV  240
WSVELHQQFV SAVNQLGLDK AVPKRILELM NVPGLTRENV ASHLQKFRLY LKRLSGGVPQ  300
QQSGISGTFC GSVESNVKLG SRGRFDIQAL AASGQIPPQT LAALHAELLG RPAGNLVPAM  360
DQPALLHASL QGPKRLPVEH CLTFGQPLVK GQSNIYKQFP QSIFSVEDVS SRYGAWTTNS  420
LGTVGPSNNV GGASNPNSNL LMDILQQQRQ QQQKQPPLQQ QSVLPEPSRS INVQPSCLVV  480
PSQSSASFQA GSPASVNQNS SFNRNSVIDY SILSPQSNNS ALNVGHISNG DAKTSGVVCG  540
YSAPGSSSTL SSCSLNADNS TGLQNSAATF VGDARQLPGI GPNIVDIQGS YSAKSGEILD  600
QGPLKNLGFV GKGTFIPSRF AVDEYESPMS NLNPGKVHSE SNGNLVKQEP SMDFGDNAKL  660
GTPVFRQFPS NDLMSVFTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22232295164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088184.10.0two-component response regulator ORR21
SwissprotQ8H7S71e-171ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLW9QMB40.0W9QMB4_9ROSA; Two-component response regulator
STRINGXP_010088184.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-122response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]