PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010088096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GeBP | ||||||||
Protein Properties | Length: 307aa MW: 34025.3 Da PI: 6.7116 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 114.4 | 6.8e-36 | 103 | 195 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 lfqrlwse+Dei++L+G+id++aktg+ +++d++afy+f+kks++++++k+ql++K+rrLKkK+ ++ kk + + +k+h+ ++f+lskki XP_010088096.1 103 LFQRLWSEDDEIAILKGMIDYAAKTGAdAAVADMNAFYDFIKKSLHIDATKTQLSDKVRRLKKKYVNNLKK-----KYNPTKPHELEAFQLSKKI 192 69*************************66677***************************************.....77889************** PP DUF573 96 Wgs 98 Wgs XP_010088096.1 193 WGS 195 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.5E-33 | 104 | 194 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAPKRAPHLD DPPTVSSSSD EEEASSEEAS GSEDDEQEVS DSNVKPKEET PPKAKKPRSK 60 PSAMPSRQSV KRTKKSDSNA ENGGSEEEEE AKMSGGDDSK KLLFQRLWSE DDEIAILKGM 120 IDYAAKTGAD AAVADMNAFY DFIKKSLHID ATKTQLSDKV RRLKKKYVNN LKKKYNPTKP 180 HELEAFQLSK KIWGSREPKS NGTAKSNQKG KSELLLSPAA PAEIETTAID RKAGPSASLS 240 ELIRFDKSLP EHVVKQGLDL ISESKKAELE AKWRMLHIAE FELFVKKSQL ISEQSKLILE 300 AIKPSDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 173 | RRLKKKYVNNLKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010088096.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088096.1 | 0.0 | probable transcription factor At1g11510 | ||||
TrEMBL | W9QER5 | 0.0 | W9QER5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010088096.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-22 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Entrez Gene | 21397964 |