PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 705aa MW: 80131.5 Da PI: 9.4665 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.5 | 8.3e-12 | 482 | 526 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+L e+F++n ps++ +e+L+k+lgL+ ++V+ WF+N R+ XP_010087997.1 482 RNAVERLREAFAENELPSRDVKEKLSKELGLDSEKVSKWFKNARY 526 56789**************************************97 PP | |||||||
2 | PHD | 41.6 | 2.9e-14 | 240 | 294 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ + +++++lCdg C+++fH+kCl+++l++e++p g w+C+ C++ XP_010087997.1 240 FCAKCKSreAFPDNDIILCDGaCNSAFHQKCLDPPLDTENIPPGdqGWFCRFCDC 294 699****55455********66********************9999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.73E-14 | 232 | 297 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.3E-12 | 236 | 294 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.567 | 238 | 295 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.6E-8 | 240 | 293 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 4.20E-31 | 240 | 292 | No hit | No description |
Pfam | PF00628 | 8.8E-12 | 240 | 294 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 241 | 292 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 468 | 525 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.989 | 471 | 531 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-10 | 473 | 537 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-9 | 473 | 535 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.61E-8 | 474 | 526 | No hit | No description |
Pfam | PF00046 | 2.7E-9 | 482 | 526 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MRGTAKKLSS EDSGKPSHSS AETEPNLIAS LKLKKCSKVY RSIKNKQRLK PRVKSTGSPL 60 SKKKNGDSPN RGTGNSNISR KLMAKRVLSK KKLGTKSSKK LSPSKLQGEK VQPSGDEGVG 120 ENENRDDSIE RVKKRRRWKK KKVNAELDEP SRLQRRTRYL MIKMKLEQNL IDAYSGEGWK 180 GQSREKIRPE KELQRAKKQI LKCKLGIRDA IRQLDMLSSV GSIEDSVMAP DGSVYHEHIF 240 CAKCKSREAF PDNDIILCDG ACNSAFHQKC LDPPLDTENI PPGDQGWFCR FCDCRMEILE 300 ALNAHLGTLF TMNNSWEDVF KEEAALPEDG NAALNADDEW PSDDSADDDY DPQRGENSSS 360 IGGAETDDNA SDDEYPSNGS VGSDDSSDAE ILCGRRQRRE VDYRKLYDEM FGKDAPPYEQ 420 MSEDEDWGPS KRKRREKESD AATTLMTLHE SEKKSLDGDI DEERTKLRHD TQNKRSFFRI 480 PRNAVERLRE AFAENELPSR DVKEKLSKEL GLDSEKVSKW FKNARYLALK TRKAEKEKEL 540 PTSTASISKD SKCENMMKED ADLIMSDNTS TETVVYVAKN VRKTSQRKRP KSLSSPFKKK 600 RRKGSSLMSP VNKNKESKEL SDDVMLKKLL KEKTKEKKRV NFIADDGCLD AEAEMERLCK 660 VKDRLESLKQ RLVQFQNAKA KNSDKPTFYG ESVIYVPIAE LREKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 91 | RKLMAKRVLSKKK |
2 | 132 | 139 | KKRRRWKK |
3 | 431 | 436 | RKRREK |
4 | 586 | 602 | RKRPKSLSSPFKKKRRK |
5 | 597 | 601 | KKKRR |
6 | 597 | 602 | KKKRRK |
7 | 598 | 602 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087997.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087997.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-161 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | W9QLT1 | 0.0 | W9QLT1_9ROSA; Pathogenesis-related homeodomain protein | ||||
STRING | XP_010087997.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-162 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Entrez Gene | 21399897 |
Publications ? help Back to Top | |||
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