PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087997.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HB-PHD
Protein Properties Length: 705aa    MW: 80131.5 Da    PI: 9.4665
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087997.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.58.3e-12482526953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +e+L e+F++n  ps++ +e+L+k+lgL+ ++V+ WF+N R+
  XP_010087997.1 482 RNAVERLREAFAENELPSRDVKEKLSKELGLDSEKVSKWFKNARY 526
                     56789**************************************97 PP
2PHD41.62.9e-14240294150
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ C++  +  +++++lCdg C+++fH+kCl+++l++e++p g   w+C+ C++
  XP_010087997.1 240 FCAKCKSreAFPDNDIILCDGaCNSAFHQKCLDPPLDTENIPPGdqGWFCRFCDC 294
                     699****55455********66********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.73E-14232297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-12236294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.567238295IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-8240293IPR001965Zinc finger, PHD-type
CDDcd155044.20E-31240292No hitNo description
PfamPF006288.8E-12240294IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590241292IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.2E-12468525IPR009057Homeodomain-like
PROSITE profilePS5007112.989471531IPR001356Homeobox domain
SuperFamilySSF466891.28E-10473537IPR009057Homeodomain-like
SMARTSM003892.8E-9473535IPR001356Homeobox domain
CDDcd000861.61E-8474526No hitNo description
PfamPF000462.7E-9482526IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRGTAKKLSS EDSGKPSHSS AETEPNLIAS LKLKKCSKVY RSIKNKQRLK PRVKSTGSPL  60
SKKKNGDSPN RGTGNSNISR KLMAKRVLSK KKLGTKSSKK LSPSKLQGEK VQPSGDEGVG  120
ENENRDDSIE RVKKRRRWKK KKVNAELDEP SRLQRRTRYL MIKMKLEQNL IDAYSGEGWK  180
GQSREKIRPE KELQRAKKQI LKCKLGIRDA IRQLDMLSSV GSIEDSVMAP DGSVYHEHIF  240
CAKCKSREAF PDNDIILCDG ACNSAFHQKC LDPPLDTENI PPGDQGWFCR FCDCRMEILE  300
ALNAHLGTLF TMNNSWEDVF KEEAALPEDG NAALNADDEW PSDDSADDDY DPQRGENSSS  360
IGGAETDDNA SDDEYPSNGS VGSDDSSDAE ILCGRRQRRE VDYRKLYDEM FGKDAPPYEQ  420
MSEDEDWGPS KRKRREKESD AATTLMTLHE SEKKSLDGDI DEERTKLRHD TQNKRSFFRI  480
PRNAVERLRE AFAENELPSR DVKEKLSKEL GLDSEKVSKW FKNARYLALK TRKAEKEKEL  540
PTSTASISKD SKCENMMKED ADLIMSDNTS TETVVYVAKN VRKTSQRKRP KSLSSPFKKK  600
RRKGSSLMSP VNKNKESKEL SDDVMLKKLL KEKTKEKKRV NFIADDGCLD AEAEMERLCK  660
VKDRLESLKQ RLVQFQNAKA KNSDKPTFYG ESVIYVPIAE LREKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17991RKLMAKRVLSKKK
2132139KKRRRWKK
3431436RKRREK
4586602RKRPKSLSSPFKKKRRK
5597601KKKRR
6597602KKKRRK
7598602KKRRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087997.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087997.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-161PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLW9QLT10.0W9QLT1_9ROSA; Pathogenesis-related homeodomain protein
STRINGXP_010087997.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-162pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]