PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14695.3 Da PI: 11.3432 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.5 | 8.5e-12 | 6 | 86 | 1 | 80 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 f+k l++ dv ++ l++p k +++ + ++ + l+++d++g W++ + +rkk+g vl++ W +Fv ++gL gD v XP_010087406.1 6 FQKSLKKTDVASR--LSFPSKSIKNLpgfE--GRNVVHLRVMDKRGSPWRFSCYIRKKGGFrkPVLSGDWHRFVVSKGLSIGDEV 86 8899988888875..9*******6669663..346678***************6677776688*******************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-15 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.515 | 4 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-11 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.67E-13 | 5 | 91 | No hit | No description |
SMART | SM01019 | 0.0069 | 6 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-9 | 6 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MAVMIFQKSL KKTDVASRLS FPSKSIKNLP GFEGRNVVHL RVMDKRGSPW RFSCYIRKKG 60 GFRKPVLSGD WHRFVVSKGL SIGDEVRLFK EIDQATGALL HYRVEVTKFN QMRLFGVSIE 120 HAPTIVRM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087406.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9QYE3 | 3e-89 | W9QYE3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087406.1 | 5e-90 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
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Entrez Gene | 21401402 |