PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087394.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 467aa MW: 50930.9 Da PI: 5.8262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087394.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00055	342	364	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+ sF++ L H++ H XP_010087394.1 342 YTCPECNASFRSGNALGGHMSAH 364 9****************999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.28E-5	339	369	No hit	No description
Pfam	PF13912	1.4E-9	341	364	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.198	342	369	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	344	364	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MAPMEKQVPE SDPQKYCEEW FTMANTTGKE FELPNISNSI AASSNNNIPT PNMITPSTNI 60 TQNFVSNSNP MNHVPNLINP HFANTQRHLL SHFPRPSPLR IRNHGNNIYL NGVQAMTSAI 120 YHNGDPLANN LSDGTNYPMG NDPFVPLDPS TFVVNPNRSM VYQQQIPTLP GPLSSGHTHL 180 RTTITQITEF HFLPNIGESS TFTTPTPISS FPTPNYGTPI PISAPSQFLD DHLSQVHQTL 240 ADLGDLGVIF PVPPLAVYRP NHFCPACNYD LSFPHPNFNP PGASADRAPQ RPRFNQCEYN 300 NIVNGRPIKQ EMNDNVVAGN YQAQAAAPVA PAPEEAQERR AYTCPECNAS FRSGNALGGH 360 MSAHARKRKR EMINRFERAA NPNPLPPEDC EMFAYIDAAI GINNNNVVDN MIRDVAAVAP 420 LLGDVLPAAA AAAAAAESIT IENPGELDEE FSSASSTTYM AGGKLKL

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MAPMEKQVPE SDPQKYCEEW FTMANTTGKE FELPNISNSI AASSNNNIPT PNMITPSTNI  60
TQNFVSNSNP MNHVPNLINP HFANTQRHLL SHFPRPSPLR IRNHGNNIYL NGVQAMTSAI  120
YHNGDPLANN LSDGTNYPMG NDPFVPLDPS TFVVNPNRSM VYQQQIPTLP GPLSSGHTHL  180
RTTITQITEF HFLPNIGESS TFTTPTPISS FPTPNYGTPI PISAPSQFLD DHLSQVHQTL  240
ADLGDLGVIF PVPPLAVYRP NHFCPACNYD LSFPHPNFNP PGASADRAPQ RPRFNQCEYN  300
NIVNGRPIKQ EMNDNVVAGN YQAQAAAPVA PAPEEAQERR AYTCPECNAS FRSGNALGGH  360
MSAHARKRKR EMINRFERAA NPNPLPPEDC EMFAYIDAAI GINNNNVVDN MIRDVAAVAP  420
LLGDVLPAAA AAAAAAESIT IENPGELDEE FSSASSTTYM AGGKLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9QDA4	0.0	W9QDA4_9ROSA; Uncharacterized protein
STRING	XP_010087394.1	0.0	(Morus notabilis)

Link Out ? help Back to Top
Entrez Gene	21401390