PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 283aa    MW: 31703.8 Da    PI: 6.0319
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087390.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.8e-17228260335
            GATA   3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C t +Tp+WRrgp g+k+LCnaCG++yrk+++
  XP_010087390.1 228 KCLTHTTPMWRRGPLGPKSLCNACGIKYRKQEE 260
                     6*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.09E-11219262No hitNo description
Gene3DG3DSA:3.30.50.103.2E-13219260IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.3E-13220272IPR000679Zinc finger, GATA-type
CDDcd002023.39E-10223257No hitNo description
PfamPF003206.0E-15228260IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.712229256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKKLQYNNNY SNQAGFVDLT LRLGMPNHDY SDINNPTEIC QSSLNSNYLF SLCHFNGSHM  60
SSTTHDQPLM QYWQYGHNRM VSGDHITDNG YYNMINNTSG GVPSNYFGRI FNQTGTNLGH  120
QIINTGPDQV FSEGPHYTYS TPNSSTFNAI TSNPYTSTSI SPAIMKNNID LLCTRSRGQS  180
SLRKNNRGKK QSEAVVVDVG EEEEEEEEEV EDDDDDDDDA NKRCSNPKCL THTTPMWRRG  240
PLGPKSLCNA CGIKYRKQEE RIRAAEKIAA AKTGNTSTIS NLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023017.13e-55transcription factor stalky
TrEMBLW9QK790.0W9QK79_9ROSA; GATA transcription factor 29
STRINGXP_010087392.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-14GATA transcription factor 29