PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010087390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 283aa MW: 31703.8 Da PI: 6.0319 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53 | 4.8e-17 | 228 | 260 | 3 | 35 |
GATA 3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C t +Tp+WRrgp g+k+LCnaCG++yrk+++ XP_010087390.1 228 KCLTHTTPMWRRGPLGPKSLCNACGIKYRKQEE 260 6*****************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.09E-11 | 219 | 262 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-13 | 219 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 1.3E-13 | 220 | 272 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.39E-10 | 223 | 257 | No hit | No description |
Pfam | PF00320 | 6.0E-15 | 228 | 260 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.712 | 229 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MKKLQYNNNY SNQAGFVDLT LRLGMPNHDY SDINNPTEIC QSSLNSNYLF SLCHFNGSHM 60 SSTTHDQPLM QYWQYGHNRM VSGDHITDNG YYNMINNTSG GVPSNYFGRI FNQTGTNLGH 120 QIINTGPDQV FSEGPHYTYS TPNSSTFNAI TSNPYTSTSI SPAIMKNNID LLCTRSRGQS 180 SLRKNNRGKK QSEAVVVDVG EEEEEEEEEV EDDDDDDDDA NKRCSNPKCL THTTPMWRRG 240 PLGPKSLCNA CGIKYRKQEE RIRAAEKIAA AKTGNTSTIS NLN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010087390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023017.1 | 3e-55 | transcription factor stalky | ||||
TrEMBL | W9QK79 | 0.0 | W9QK79_9ROSA; GATA transcription factor 29 | ||||
STRING | XP_010087392.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20750.1 | 1e-14 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21401388 |