PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 357aa MW: 38229.9 Da PI: 6.8029 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.7 | 1.2e-35 | 23 | 102 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssss 81 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + + XP_010087306.1 23 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELpswhptgnsdhD-----------ADPE 102 79**************************************************************544443322221...........1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-32 | 23 | 117 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.172 | 25 | 83 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MRMKGVGGGE IVQVQGGHIV RSTGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLIKKAKSAI DKLAELPSWH PTGNSDHDAD PEADPNVSVS GEMGIGSEEQ 120 SGYGFQLQRA ELSAGENTDF IADTMKSFFP TTTSVAANSS MNFQNYPQDN LPTQDLGLSL 180 HCFQEQGGAD HAPPSEQAMF GSVVGFGSSG YQRMVAWNGH DQASGGESRG FAFYAPPPQL 240 TAAHQQALLG QGSAATPFSN QRGTLQSSFS TPLARAWDDM PSMAVAAAAA SQRPQQQHIH 300 QHSSSSSSIF GTRFASYGGG LPVFRIPARI HGEEEDGGHG VVSERPSSSS SPNSAHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-23 | 30 | 83 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-23 | 30 | 83 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087306.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087306.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_024019839.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | Q8LPR5 | 6e-64 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | W9QMK8 | 0.0 | W9QMK8_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087306.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-47 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21386539 |