PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087177.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23212.6 Da    PI: 8.4576
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087177.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.86e-23953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krien++nr+vt+skR++g++KKA+E+SvLCda+v++ii  s+ k
  XP_010087177.1  9 KRIENSTNRHVTLSKRKKGLIKKASEISVLCDAKVSIIISTSSSK 53
                    79************************************9877655 PP
2K-box49.12.4e-1772135164
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkk 64 
                     yq+ sg++l++ k+e+l++e++  kke+en++  +Rh++G++++sL+++eL  Le+ Le++l++
  XP_010087177.1  72 YQRLSGQKLWDVKHENLNNEIDMTKKENENMEIDLRHMKGQEIQSLNIRELIGLERTLENGLTS 135
                     78999********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-31161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.932161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-29296IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-181053IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-213859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1084159IPR002487Transcription factor, K-box
PROSITE profilePS512979.64985166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRHVT LSKRKKGLIK KASEISVLCD AKVSIIISTS SSKAPEHYCS  60
PTTSLSFILE EYQRLSGQKL WDVKHENLNN EIDMTKKENE NMEIDLRHMK GQEIQSLNIR  120
ELIGLERTLE NGLTSADFLD HLRQKDKILG AENKRLTYEL CKMEMEGQGM DNGRYNDKMR  180
DYNPLPYAFH VQPMQPNLQG M
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019081.11e-139floral homeotic protein PMADS 2
SwissprotQ074743e-70MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLW9QXU51e-147W9QXU5_9ROSA; Floral homeotic protein PMADS 2
STRINGXP_010087177.11e-148(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]