PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087146.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 331aa    MW: 36772.6 Da    PI: 7.6566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087146.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.8e-4961441129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                     lp+GfrFhP+deelv++yL +k+ + +++ +          + +vd++k+ePw++p ++  + k+wyf+s+rd+kyatg r+nrat+sgyWkatg
  XP_010087146.1   6 LPAGFRFHPRDEELVCDYLFNKILNLSCDHSAnghqyyssLFIHVDLNKSEPWEIPGSACVGGKDWYFYSQRDRKYATGLRTNRATASGYWKATG 100
                     799**********************99555334566666568899***********7666789******************************** PP

             NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kd++vl+k  +g+lvg++ktLvfy+grapkg+ktdWvmhe+rle
  XP_010087146.1 101 KDRPVLRKggGGALVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 144
                     *******9888889***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-583166IPR003441NAC domain
PROSITE profilePS5100555.2646166IPR003441NAC domain
PfamPF023651.2E-257143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVESKLPAGF RFHPRDEELV CDYLFNKILN LSCDHSANGH QYYSSLFIHV DLNKSEPWEI  60
PGSACVGGKD WYFYSQRDRK YATGLRTNRA TASGYWKATG KDRPVLRKGG GGALVGMRKT  120
LVFYQGRAPK GRKTDWVMHE FRLEGSLVTK LSSFKEDWVL CRVFYKSREE GGASASKLAS  180
SDVMGLGMKS NSLPALMDAY ISFDQPTPPP MPPMPHETPD HHHQQVPCLS HNINLPQNYH  240
DLILSNLPAK TGTSTRAEAA TLGVPNLVDL DPFSFSRADN ELLLKAILNQ LTTPDFKGSG  300
SPVTLSIGEG TSESYNLSET EVGMPNVWAH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44116712166NO APICAL MERISTEM PROTEIN
1ut4_B1e-44116712166NO APICAL MERISTEM PROTEIN
1ut7_A1e-44116712166NO APICAL MERISTEM PROTEIN
1ut7_B1e-44116712166NO APICAL MERISTEM PROTEIN
3swm_A1e-44116715169NAC domain-containing protein 19
3swm_B1e-44116715169NAC domain-containing protein 19
3swm_C1e-44116715169NAC domain-containing protein 19
3swm_D1e-44116715169NAC domain-containing protein 19
3swp_A1e-44116715169NAC domain-containing protein 19
3swp_B1e-44116715169NAC domain-containing protein 19
3swp_C1e-44116715169NAC domain-containing protein 19
3swp_D1e-44116715169NAC domain-containing protein 19
4dul_A1e-44116712166NAC domain-containing protein 19
4dul_B1e-44116712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087146.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087146.20.0NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE67e-95NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLW9QCM50.0W9QCM5_9ROSA; NAC domain-containing protein
STRINGXP_010087146.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.25e-95NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]