PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 498aa MW: 54149.2 Da PI: 7.7899 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.4 | 8.9e-37 | 78 | 241 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +i el+++ +++sa+ + XP_010086998.1 78 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDSIAELPSLnssfpdtpkqlsdekrpsvgkeqGFDSAEVV 172 689*************************************************************9999999988888888888777766666555 PP TCP 74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135 ++ + + +++++++ + +++a+s+ s++s+ s l+l++ r kar+rarer ++++ ++n+ XP_010086998.1 173 eleLDQGEANYQQQNQQHLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKDKEKENS 241 76644444444444555556666667777777777777777753336669********98888777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-42 | 79 | 238 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.904 | 80 | 138 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.441 | 218 | 238 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MEVEEIQAQA CNNNNSTTKF PRNKLGQKGG HDHHYPGDED DLGDQIKRPN TGPTAIDGGN 60 RLRGWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP 120 SKAVEWLINA ASDSIAELPS LNSSFPDTPK QLSDEKRPSV GKEQGFDSAE VVELELDQGE 180 ANYQQQNQQH LSLSKSACSS TSETSKGSGL SLSRSEIRVN RVKARERARE RAAKDKEKEN 240 SDSRIPPPPL HNHHHHHHHQ NINPISQSPS FTELLTGGIS NVNTNSNNNN DSSSPTTASD 300 QPNLFHKGST AMATATATAM QMDYFTTGLL GLSSTRNHHH HHSSGFAGLP MAMPMPQPFS 360 VVSSGGDGHA AAEALPPQFS FVPEQLIATT SSQPNGSGGD YSLNFSISSS GLAGFNRGTL 420 QSNSSPSSFL PHLQRFASPI DGTTNVPFFI GAAAAASPME NHHHHHNHHQ FPAGFDGRLQ 480 LYYGDGGRHS DQKGKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 85 | 139 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 85 | 139 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086998.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086998.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024017961.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024017968.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | W9QCB8 | 0.0 | W9QCB8_9ROSA; Uncharacterized protein | ||||
STRING | XP_010086998.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-43 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21389345 |