PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17762.5 Da PI: 9.5295 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LC+aeva++ifs++gkly y+s XP_010086970.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCEAEVAIVIFSPSGKLYQYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 64.4 | 4.1e-22 | 86 | 148 | 13 | 75 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 + e +++e++ Lk+ +enL+ ++Rhl GedL L +keL+qLe+qL++++++iR kK +ll + XP_010086970.1 86 TIEFWKTEIDELKRSTENLEVNLRHLSGEDLAMLGMKELKQLERQLKTGVERIRCKKVKLLEN 148 5799*******************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.987 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.17E-40 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-32 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.227 | 87 | 155 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.5E-17 | 87 | 147 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCE AEVAIVIFSP SGKLYQYASH 60 DMERSIARYR SEIGLPGSAD NPTCRTIEFW KTEIDELKRS TENLEVNLRH LSGEDLAMLG 120 MKELKQLERQ LKTGVERIRC KKVKLLENPD DANPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017888.1 | 1e-106 | agamous-like MADS-box protein AGL1 | ||||
TrEMBL | W9QX82 | 1e-110 | W9QX82_9ROSA; Agamous-like MADS-box protein AGL16 | ||||
STRING | XP_010086970.1 | 1e-111 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-45 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393422 |