PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YC | ||||||||
Protein Properties | Length: 991aa MW: 108932 Da PI: 7.448 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.3 | 1.3e-54 | 809 | 912 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_010086741.1 809 QLQTFWANQyqeIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 903 89******99999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_010086741.1 904 VDIVPREDL 912 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01699 | 7.5E-20 | 73 | 214 | IPR004837 | Sodium/calcium exchanger membrane region |
Pfam | PF01699 | 7.6E-26 | 368 | 517 | IPR004837 | Sodium/calcium exchanger membrane region |
SuperFamily | SSF47113 | 2.51E-32 | 798 | 903 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-20 | 831 | 894 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.2E-37 | 832 | 909 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006814 | Biological Process | sodium ion transport | ||||
GO:0010163 | Biological Process | high-affinity potassium ion import | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0034399 | Cellular Component | nuclear periphery | ||||
GO:0015079 | Molecular Function | potassium ion transmembrane transporter activity | ||||
GO:0015081 | Molecular Function | sodium ion transmembrane transporter activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 991 aa Download sequence Send to blast |
MALSLLSTSL SLLSTLLFFF LLSPQNPLLP LPLAPHTHRF LLEEPPPTSN NGGGGGYGGL 60 SSTPLFLSIP LLSLLLLLYF YLLIKTAQDH FCLVTTKLSS LLNLSPSMAA VTLLALGNGA 120 PDVFASLTAV RRGNYRTGIG AILSAGTFVS AFVVGFVAIH AAPFALNPAT FVRDVSFFLI 180 AALFLFYVYL SAEIFLWQAV GFVAFYLFFV GFVFWMDLGT VGAEEREKSG EVDFPRNLTP 240 VATPDCEIGE GFGDSEAEKP SFGFRRVLGM ISKAWELPFS VLLKLTIPRT APSEWSRFYT 300 SANIALCPVA LLYAGNSFIP FDHPIYFLLP HTHFPLWLVV LFASSSLALL HYITEKEPPK 360 TEQMPVVLVA FVMSVFWIST VAGELLNCLA TLGSLLKLPP SLLGLTVLAW GNSVGDLVAD 420 VAVAKAGHPE MAMAGCFAGP MFNMLVGLGS ALVIQTTNLY PKAYELHFHV GIVIAFVFLL 480 LSLMGSLLVI TWNRFRVPRF WGFCLVGLYV VFTAVSLVIA KFSGLRTNGN EQSSYRLSLQ 540 LVHATVDEDY ADTSTLLIAE KRMAETFLDC NWRIKSNNPS PGGHIGGRDR NSGGRGEAAS 600 TSTTASASVA TSRRKCKRTS TVWDHFDTIR EIDNKVKPVT VFFSMHGLIS RICSAPDADD 660 FFSEKVSTPI LDLVESPINL KNLSSKVSHL RPLKTSVLAC FTLKSSRLLD SLQAGLCRNC 720 NNWPMKFCAS FRMDHPGHNQ PPPMMMVGGG GQLPYGANPY QSNQMPGNPT PGSVGSMQSV 780 SQAAGAQLAQ HQLAYQHIQQ QQQQQLQQQL QTFWANQYQE IEKVNDFKNH SLPLARIKKI 840 MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF 900 DFLVDIVPRE DLKDEVVASI PRGTLPVGGP ADTLPYCYMP PQHAPQVGAS GMMMGKPMMD 960 PPMYVQQAPN PYMAQQMWQQ PSDQQQSSSD R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-56 | 817 | 909 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 881 | 887 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Membrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000269|PubMed:21945443}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086741.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026958.1 | 0.0 | cation/calcium exchanger 5 | ||||
Swissprot | O04034 | 0.0 | CCX5_ARATH; Cation/calcium exchanger 5 | ||||
TrEMBL | W9QWK7 | 0.0 | W9QWK7_9ROSA; Nuclear transcription factor Y subunit C-3 | ||||
STRING | XP_010086741.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9897 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-70 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385554 |
Publications ? help Back to Top | |||
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