PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 991aa    MW: 108932 Da    PI: 7.448
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086741.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.31.3e-548099121101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_010086741.1 809 QLQTFWANQyqeIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 903
                     89******99999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_010086741.1 904 VDIVPREDL 912
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016997.5E-2073214IPR004837Sodium/calcium exchanger membrane region
PfamPF016997.6E-26368517IPR004837Sodium/calcium exchanger membrane region
SuperFamilySSF471132.51E-32798903IPR009072Histone-fold
PfamPF008081.1E-20831894IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.2E-37832909IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006814Biological Processsodium ion transport
GO:0010163Biological Processhigh-affinity potassium ion import
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0034399Cellular Componentnuclear periphery
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
GO:0015081Molecular Functionsodium ion transmembrane transporter activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MALSLLSTSL SLLSTLLFFF LLSPQNPLLP LPLAPHTHRF LLEEPPPTSN NGGGGGYGGL  60
SSTPLFLSIP LLSLLLLLYF YLLIKTAQDH FCLVTTKLSS LLNLSPSMAA VTLLALGNGA  120
PDVFASLTAV RRGNYRTGIG AILSAGTFVS AFVVGFVAIH AAPFALNPAT FVRDVSFFLI  180
AALFLFYVYL SAEIFLWQAV GFVAFYLFFV GFVFWMDLGT VGAEEREKSG EVDFPRNLTP  240
VATPDCEIGE GFGDSEAEKP SFGFRRVLGM ISKAWELPFS VLLKLTIPRT APSEWSRFYT  300
SANIALCPVA LLYAGNSFIP FDHPIYFLLP HTHFPLWLVV LFASSSLALL HYITEKEPPK  360
TEQMPVVLVA FVMSVFWIST VAGELLNCLA TLGSLLKLPP SLLGLTVLAW GNSVGDLVAD  420
VAVAKAGHPE MAMAGCFAGP MFNMLVGLGS ALVIQTTNLY PKAYELHFHV GIVIAFVFLL  480
LSLMGSLLVI TWNRFRVPRF WGFCLVGLYV VFTAVSLVIA KFSGLRTNGN EQSSYRLSLQ  540
LVHATVDEDY ADTSTLLIAE KRMAETFLDC NWRIKSNNPS PGGHIGGRDR NSGGRGEAAS  600
TSTTASASVA TSRRKCKRTS TVWDHFDTIR EIDNKVKPVT VFFSMHGLIS RICSAPDADD  660
FFSEKVSTPI LDLVESPINL KNLSSKVSHL RPLKTSVLAC FTLKSSRLLD SLQAGLCRNC  720
NNWPMKFCAS FRMDHPGHNQ PPPMMMVGGG GQLPYGANPY QSNQMPGNPT PGSVGSMQSV  780
SQAAGAQLAQ HQLAYQHIQQ QQQQQLQQQL QTFWANQYQE IEKVNDFKNH SLPLARIKKI  840
MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF  900
DFLVDIVPRE DLKDEVVASI PRGTLPVGGP ADTLPYCYMP PQHAPQVGAS GMMMGKPMMD  960
PPMYVQQAPN PYMAQQMWQQ PSDQQQSSSD R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-56817909395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1881887RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtMembrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000269|PubMed:21945443}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026958.10.0cation/calcium exchanger 5
SwissprotO040340.0CCX5_ARATH; Cation/calcium exchanger 5
TrEMBLW9QWK70.0W9QWK7_9ROSA; Nuclear transcription factor Y subunit C-3
STRINGXP_010086741.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF989722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-70nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Mäser P, et al.
    Phylogenetic relationships within cation transporter families of Arabidopsis.
    Plant Physiol., 2001. 126(4): p. 1646-67
    [PMID:11500563]
  2. Shigaki T,Rees I,Nakhleh L,Hirschi KD
    Identification of three distinct phylogenetic groups of CAX cation/proton antiporters.
    J. Mol. Evol., 2006. 63(6): p. 815-25
    [PMID:17086450]
  3. Zhang X,Zhang M,Takano T,Liu S
    Characterization of an AtCCX5 gene from Arabidopsis thaliana that involves in high-affinity K⁺ uptake and Na⁺ transport in yeast.
    Biochem. Biophys. Res. Commun., 2011. 414(1): p. 96-100
    [PMID:21945443]
  4. Wang F, et al.
    Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis.
    J. Exp. Bot., 2016. 67(12): p. 3747-62
    [PMID:26889007]
  5. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]