PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010086689.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 424aa MW: 46198.9 Da PI: 6.3444

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010086689.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.3e-39	60	121	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+sss XP_010086689.1 60 PDKVLPCPRCNSMETKFCYFNNYNVNQPRHFCKNCHRYWTAGGTIRNVPVGAGRRRNKHSSS 121 78999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	48	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	61	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MEDSVEKSCE QDILSEFDGK QFSHQNPGQE NEAAVVDHNS EEDQGAETDK TRKEKALKKP 60 DKVLPCPRCN SMETKFCYFN NYNVNQPRHF CKNCHRYWTA GGTIRNVPVG AGRRRNKHSS 120 SQYHQGATNS DATAVTQGGT NGGDSQSLSC LPASPRIVSG NQEMVKLVSD TPLYESMETK 180 LNLRDQKRTN TWSAAYGDGC EEPSSSSCSM ATTTSQDNGY LGKDDSSAVH TNPTPCYPVT 240 VPHWAYPWNP GWSIMMVGAN SSNPGPSVMS SMPAMTAPGF CAPNIPFPFV PAPYWGCVPS 300 WDSRKWISPV SPSSSTSNSG CSGSGSPTLG KHSRDTNMQA EEKTEQCLWV PKTLRIDDPD 360 EAAKSSIWST LGIEPDTNQP VGRGGIFKAF KPKSDAKSDA KDDDHVLQSN PAALSRSRSF 420 QEST

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MEDSVEKSCE QDILSEFDGK QFSHQNPGQE NEAAVVDHNS EEDQGAETDK TRKEKALKKP  60
DKVLPCPRCN SMETKFCYFN NYNVNQPRHF CKNCHRYWTA GGTIRNVPVG AGRRRNKHSS  120
SQYHQGATNS DATAVTQGGT NGGDSQSLSC LPASPRIVSG NQEMVKLVSD TPLYESMETK  180
LNLRDQKRTN TWSAAYGDGC EEPSSSSCSM ATTTSQDNGY LGKDDSSAVH TNPTPCYPVT  240
VPHWAYPWNP GWSIMMVGAN SSNPGPSVMS SMPAMTAPGF CAPNIPFPFV PAPYWGCVPS  300
WDSRKWISPV SPSSSTSNSG CSGSGSPTLG KHSRDTNMQA EEKTEQCLWV PKTLRIDDPD  360
EAAKSSIWST LGIEPDTNQP VGRGGIFKAF KPKSDAKSDA KDDDHVLQSN PAALSRSRSF  420
QEST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010086689.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ854501	1e-36	FJ854501.1 Eleusine coracana clone BMDL-DOF-019 Dof-type zinc finger protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024457.1	0.0	cyclic dof factor 2
TrEMBL	W9QBM5	0.0	W9QBM5_9ROSA; Dof zinc finger protein
STRING	XP_010086689.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-68	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	21384286