PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 370aa MW: 40510.2 Da PI: 8.8639 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.3 | 1.9e-33 | 68 | 123 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + Y+eClkNhAa++Ggha+DGCgEfmps+++ +++++lkCaACgCHRnFHRr++e XP_010086552.1 68 YSYRECLKNHAATIGGHALDGCGEFMPSPSSLlSDPTSLKCAACGCHRNFHRRHPE 123 68**************************99999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-27 | 68 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.698 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-30 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-17 | 70 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.51E-17 | 235 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-28 | 239 | 307 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-24 | 246 | 302 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDLSSSSPPI SPTPTNTSPN TDSQTPPPPP PPPPPQPPLF PQPIKSLSFA AINGSFNRQQ 60 PPKIVVSYSY RECLKNHAAT IGGHALDGCG EFMPSPSSLL SDPTSLKCAA CGCHRNFHRR 120 HPEDLYHPPR HVTTGIHLLP SRPPPPLLLR RNSSPSPSLS PARSSSPGPS PTPSPTPSPH 180 SPPSVSHLPP NYSSSSYFAS PPQILLALSS GLSRPSDEQY QNLMNPTAHK MSGAENGNIT 240 NVSNARKRFR TKFSQEQKEK MCLFAEKLGW KMQRSEEKVV EEFCNEVGIR KGVLKVWMHN 300 NKHTLGKRSS SSSADRGLLI SRNVINNGTN VDDNHHNPHE EDTTDIEKDD EEDHRKANFN 360 FFANGSSSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 247 | 304 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086552.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086552.2 | 0.0 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | W9QW01 | 0.0 | W9QW01_9ROSA; Uncharacterized protein | ||||
STRING | XP_010086552.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 7e-28 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385046 |