PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14791.8 Da PI: 6.7856 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 12 | 109 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.s 88 k+l+p dv + + +p + + + + + ++ ++++d+ g + ++ + + +sg ++ ++GW +Fvk+ +L+eg++v F + XP_010086530.1 12 KTLSPDDVKDK--FHVPSNWVGTLfpnlE--QDSELPIQVRDQAGSERQFVM--KTRSGDylkaVFQRRGWHKFVKDFDLREGETVYFWKEAVgG 100 55655555544..6889999877788544..44555699******9999999..77776645546666********************8444334 PP EE..EEEEE CS B3 89 efelvvkvf 97 + ++v+v+ XP_010086530.1 101 RDIMRVQVR 109 444566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-13 | 7 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-15 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.73E-11 | 8 | 110 | No hit | No description |
Pfam | PF02362 | 1.5E-7 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MADCARPPCY GKTLSPDDVK DKFHVPSNWV GTLFPNLEQD SELPIQVRDQ AGSERQFVMK 60 TRSGDYLKAV FQRRGWHKFV KDFDLREGET VYFWKEAVGG RDIMRVQVRD EPQFVQLFGV 120 HLVMPNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9SNH0 | 3e-90 | W9SNH0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010086530.1 | 5e-91 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17870 | 2 | 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 21383944 |