PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013906476.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C3H

Protein Properties

Length: 460aa MW: 42395.4 Da PI: 7.6684

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013906476.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.1e-12	263	287	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +f+ tG+C+yG +C+FaHg XP_013906476.1 263 KTKLCERFMTTGQCPYGQKCTFAHG 287 8***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.8E-15	259	295	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.14E-9	260	293	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.295	261	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-6	263	288	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-9	263	287	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MQDMSQITVL GPGGMPVIAA PTSVGMGGGH LGTGGQGGQG GAGDDSNQFY KTRMCHKYAH 60 GEADLRADLR AGGGGGGGGG GGGGGQGPMG GSGGGGIGMG MGGGGGGGGI GMGGGVGIGS 120 GMMMGGGGAP MVGGLPGAPP PARPMRSGKI MTPSGSAPTG SLAPGSSLVG PAGSMGGGGM 180 GPMGAGMGPM GSAPIIIGAA GPGMGGPQMG GPGMGAPMMM GGPPMGAPGI VAGGMGSSGM 240 GGGGGGGGGG AGAAGPKNPG IHKTKLCERF MTTGQCPYGQ KCTFAHGHDQ LRPVPPGAIG 300 VGGGGGGGGG GGGGGGGRAG GGANRRGGGG GGGGGGGGGG DGGGGGGDGR NGGSKRQRVE 360 QAPPAARAPV VPPEHEVLPV EGASMDLSRL RSRFEALKQE INAFAADTGH SVAVFTIGGL 420 LSDAPDSAPD DASLDAILKS SLDWTLFDLY IDNPPHHEQT

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MQDMSQITVL GPGGMPVIAA PTSVGMGGGH LGTGGQGGQG GAGDDSNQFY KTRMCHKYAH  60
GEADLRADLR AGGGGGGGGG GGGGGQGPMG GSGGGGIGMG MGGGGGGGGI GMGGGVGIGS  120
GMMMGGGGAP MVGGLPGAPP PARPMRSGKI MTPSGSAPTG SLAPGSSLVG PAGSMGGGGM  180
GPMGAGMGPM GSAPIIIGAA GPGMGGPQMG GPGMGAPMMM GGPPMGAPGI VAGGMGSSGM  240
GGGGGGGGGG AGAAGPKNPG IHKTKLCERF MTTGQCPYGQ KCTFAHGHDQ LRPVPPGAIG  300
VGGGGGGGGG GGGGGGGRAG GGANRRGGGG GGGGGGGGGG DGGGGGGDGR NGGSKRQRVE  360
QAPPAARAPV VPPEHEVLPV EGASMDLSRL RSRFEALKQE INAFAADTGH SVAVFTIGGL  420
LSDAPDSAPD DASLDAILKS SLDWTLFDLY IDNPPHHEQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	321	GGRAGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013906476.1	0.0	hypothetical protein MNEG_0506
TrEMBL	A0A0D2N581	0.0	A0A0D2N581_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5512	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	9e-09	C3H family protein

Link Out ? help Back to Top
Entrez Gene	25726624

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]