PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013906239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 38408.8 Da PI: 7.1303 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 151 | 205 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH++Fv+ v+qLGG++kAtPk il++m+++gLt+ h+kSHLQkYRl XP_013906239.1 151 KTRLRWTPELHSSFVRSVQQLGGPDKATPKGILKAMNMDGLTIFHIKSHLQKYRL 205 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 150 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-17 | 150 | 206 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-24 | 151 | 206 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-7 | 153 | 204 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MQQDLLGGPP GPMHHDEQHE MLQQQPQQQQ AQPQAQQQQQ QQHPQQQHQQ HQHLPGKAAF 60 PPGMGVPGMD HFHGTPYGMQ AVPMQPGHFE HLLNAMPVTG HSLSSSFATD NVHMSGAQPT 120 LYLAAGFNMA GSKPGVSAAG SAGGGGGGGS KTRLRWTPEL HSSFVRSVQQ LGGPDKATPK 180 GILKAMNMDG LTIFHIKSHL QKYRLNARVP GASSVDGGSD GCAAGDSAEG NSGSRPASAA 240 LDGLGSVPVS ALTRKNLEDA LVLQMELQKK LHEQLELLLL LLLLLLLLLL MLLLLLLLLL 300 LLLLLLLLLL LLLLLLLLLL LLLLLLLLRL LSLEPRRSCD GSVACSCSCA EVFISGELY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-22 | 151 | 204 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-22 | 151 | 204 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-22 | 151 | 204 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-22 | 151 | 204 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013906239.1 | 0.0 | hypothetical protein MNEG_0733 | ||||
TrEMBL | A0A0D2MXL5 | 0.0 | A0A0D2MXL5_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-26 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 25726851 |
Publications ? help Back to Top | |||
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