PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013906131.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family AP2
Protein Properties Length: 455aa    MW: 47020 Da    PI: 5.0855
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013906131.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-08160222155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng...kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ ++ +grW+A++r  p e  ++    +    +  lg f+t e+Aa  ++aa+ +l+g
  XP_013906131.1 160 SRYRGVSLHS-TGRWEARVRLaPPEagRCcvaACdigPQALLGLFDTQEQAATPYDAAAARLHG 222
                     79******99.9**********999654498833566999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.06150122IPR001471AP2/ERF domain
SMARTSM003807.2E-457128IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-885123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-886123IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-10160230IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-12161229IPR001471AP2/ERF domain
SMARTSM003801.8E-11161236IPR001471AP2/ERF domain
PROSITE profilePS5103214.724161230IPR001471AP2/ERF domain
PRINTSPR003672.9E-5162173IPR001471AP2/ERF domain
PRINTSPR003672.9E-5212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSLRAADTDK FRGASDKVEQ VETTSEQVLA AGAGVGNGVA TLDASAHDKQ PRLLDQQKPS  60
INAYNIWDSG SGGLSGGEAA RVVGGRGRQL HLGAYDNEEE AARVYDRAAL AFFKLDSALN  120
FPVADYEEEL PELLATTDRS QAVSSLRGRF QYGSPCASSS RYRGVSLHST GRWEARVRLA  180
PPEAGRCCVA ACDIGPQALL GLFDTQEQAA TPYDAAAARL HGSRASLNFG PSGRPAMPAA  240
SPGLAAAAAV DSSLGDLQAA GLSAGLATTE DGNDRDAKAQ AAAEAAAAEA AAAAEAAAAL  300
TREHSRNADE GFDAHRQAPA QAEAAAQHPQ AASTDEPPSA AASRSTGAPP HAAAAAGAPR  360
RLPTLPDVWP PEDALADPRA KAAAFNGVLA LLKAVESDSA TCVLVFRALN KQLRDPARAA  420
HFFAVPYQFM RWCCAEGDAE GVRTALQAVA MSAER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013906131.10.0AP2-like ethylene-responsive transcription factor
TrEMBLA0A0D2N4940.0A0A0D2N494_9CHLO; AP2-like ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.18e-21AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]