PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013905908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | GATA | ||||||||
Protein Properties | Length: 386aa MW: 40192.7 Da PI: 7.4051 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.9 | 7.9e-15 | 323 | 357 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ ++p+WR+gp ++ LCnaCG ++r++++ XP_013905908.1 323 CMHCGVDESPQWRKGPPHKSVLCNACGTRWRRTHQ 357 99**************88888**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.0E-10 | 317 | 369 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-11 | 320 | 360 | No hit | No description |
CDD | cd00202 | 3.24E-13 | 322 | 364 | No hit | No description |
Pfam | PF00320 | 1.0E-12 | 323 | 357 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.1E-11 | 323 | 357 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 9.367 | 323 | 349 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MSYLDVDSCM LASSGYQSAK NFLLLDELPS PLDACGPDRG APRGGVLSQL PAPGLLLPLP 60 EDDPTACAGM QPPAMHHNYH HAVAAAASQQ QPHHHPLAGG SCREPAFGPA APAPFAPAGE 120 LQQLHAWQSM LTQQQQQQQQ QPYYQQQLLL QQQYTHMQQP AHAHALPQPR RVYQLVLLDD 180 ATGRPLRTAT DDDAAHVARM LESDSGSSGL SATASLPRAM SFVGSAGAVA AMAAAAGNEE 240 EEVGEEVGAA AAGGGGSGGG ARDQGNAKRR NSGKAAGGGS SVGARSQQEG DQRQQRPEGS 300 ASPAQLLRAQ APKPAAEKRT GPCMHCGVDE SPQWRKGPPH KSVLCNACGT RWRRTHQLGP 360 PVASSVLRAA GAAGSKRKAQ EFGGDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013905908.1 | 0.0 | hypothetical protein MNEG_1062 | ||||
TrEMBL | A0A0D2LKF6 | 0.0 | A0A0D2LKF6_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 6e-13 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Entrez Gene | 25727800 |
Publications ? help Back to Top | |||
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