PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013905636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | NF-YC | ||||||||
Protein Properties | Length: 191aa MW: 20126.5 Da PI: 4.7521 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43 | 9.6e-14 | 7 | 83 | 22 | 97 |
NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl arik++++ad++v +i+ +P l+ +a elf+ +l r+ a++ +t+ s ++ +v++ + dfl d XP_013905636.1 7 PLaARIKRVMQADDEVGKIAQATPFLMERALELFLQHLCERASDVAQQRGAKTVTPSHLKHVVNSDQLLDFLKDALA 83 5527**********************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-23 | 10 | 82 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.02E-20 | 10 | 83 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.1E-18 | 10 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGKKPHPLAA RIKRVMQADD EVGKIAQATP FLMERALELF LQHLCERASD VAQQRGAKTV 60 TPSHLKHVVN SDQLLDFLKD ALASAADLAE GVSEAPKPKR QRAEKKEPRE PKAAKTGREA 120 AEGAGTGAEG DALQESVADV TAAEAARIAS GPSPFALADA QAGAPVGELL AAEALATYGG 180 AQEQEYDDDY D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 8e-18 | 10 | 69 | 15 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | KPKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013905636.1 | 1e-133 | Dr1-associated corepressor | ||||
TrEMBL | A0A0D2N2G8 | 1e-132 | A0A0D2N2G8_9CHLO; Dr1-associated corepressor | ||||
STRING | XP_005652243.1 | 3e-29 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-20 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Entrez Gene | 25730803 |
Publications ? help Back to Top | |||
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