PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013905636.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family NF-YC
Protein Properties Length: 191aa    MW: 20126.5 Da    PI: 4.7521
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013905636.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC439.6e-147832297
           NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                    Pl arik++++ad++v +i+  +P l+ +a elf+ +l  r+   a++   +t+  s ++ +v++ +  dfl d   
  XP_013905636.1  7 PLaARIKRVMQADDEVGKIAQATPFLMERALELFLQHLCERASDVAQQRGAKTVTPSHLKHVVNSDQLLDFLKDALA 83
                    5527**********************************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-231082IPR009072Histone-fold
SuperFamilySSF471134.02E-201083IPR009072Histone-fold
PfamPF008087.1E-181069IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGKKPHPLAA RIKRVMQADD EVGKIAQATP FLMERALELF LQHLCERASD VAQQRGAKTV  60
TPSHLKHVVN SDQLLDFLKD ALASAADLAE GVSEAPKPKR QRAEKKEPRE PKAAKTGREA  120
AEGAGTGAEG DALQESVADV TAAEAARIAS GPSPFALADA QAGAPVGELL AAEALATYGG  180
AQEQEYDDDY D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A8e-1810691574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KPKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013905636.11e-133Dr1-associated corepressor
TrEMBLA0A0D2N2G81e-132A0A0D2N2G8_9CHLO; Dr1-associated corepressor
STRINGXP_005652243.13e-29(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-20nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]