PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013905585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 165aa MW: 18719 Da PI: 7.6082 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 64.5 | 1.5e-20 | 2 | 66 | 15 | 66 |
E2F_TDP 15 klleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekne 66 +++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL al++i+k +k + XP_013905585.1 2 RMCEKVESkGTTTYNEVADELVAEmkgavledgttyDEKNIRRRVYDALNVLLALDVISKDKKAK 66 69***9999***************************************************76654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-28 | 1 | 65 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-13 | 1 | 64 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.2E-11 | 1 | 71 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.6E-17 | 2 | 65 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SMART | SM01138 | 0.0083 | 32 | 116 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.5E-8 | 65 | 128 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.88E-10 | 65 | 114 | No hit | No description |
Gene3D | G3DSA:2.60.120.10 | 1.5E-5 | 121 | 147 | IPR014710 | RmlC-like jelly roll fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MRMCEKVESK GTTTYNEVAD ELVAEMKGAV LEDGTTYDEK NIRRRVYDAL NVLLALDVIS 60 KDKKAKADAT VEVHISDDMR EVQFEFGARP FRIHDDGDVL RLMTAAQGVG KGTRQHVPTV 120 RPQQQQQQQQ QQQQQQQQQQ QQQQQQVLRA QARGPPPPGQ QLPKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-23 | 1 | 64 | 17 | 82 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013905585.1 | 1e-116 | transcription factor Dp-1 | ||||
TrEMBL | A0A0D2NQG3 | 1e-115 | A0A0D2NQG3_9CHLO; Transcription factor Dp-1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1599 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-25 | Transcription factor DP |
Link Out ? help Back to Top | |
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Entrez Gene | 25731397 |
Publications ? help Back to Top | |||
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