PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013905143.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB

Protein Properties

Length: 849aa MW: 90464.9 Da PI: 10.1917

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013905143.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.1e-14	87	129	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eEd l + v ++G+ +W+ +a+ + gR +k+c++rw + XP_013905143.1 87 PWTQEEDASLREQVSLHGPQNWSHVAKALK-GRNGKSCRLRWVN 129 8**************************9.*********88 PP
2	Myb_DNA-binding	52.4	1.2e-16	139	182	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+eEd +l++a+k lG++ W++Ia+ ++ gRt++ +k+rw+ +l XP_013905143.1 139 SFTPEEDTILLEAHKVLGNK-WTAIAKLLP-GRTDNAIKNRWHAWL 182 69****************.*****.*********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.78	80	131	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-29	84	178	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-12	84	133	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-13	87	130	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	87	138	IPR009057	Homeodomain-like
CDD	cd00167	2.92E-11	87	129	No hit	No description
PROSITE profile	PS51294	24.3	132	186	IPR017930	Myb domain
SMART	SM00717	3.0E-16	136	184	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-15	139	182	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-23	139	185	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-12	139	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MGHSGNPTAG SGKEGPMPSQ NRTPVKRLPS KPANRKKDAG AAVAPQATPA VRGGGAAKPP 60 RSGRAADAKQ EGKEKLLQEL RTTNYRPWTQ EEDASLREQV SLHGPQNWSH VAKALKGRNG 120 KSCRLRWVNQ LAPDLKQESF TPEEDTILLE AHKVLGNKWT AIAKLLPGRT DNAIKNRWHA 180 WLKKKFPQQA AAVAAASAAA GAAAGAAAAA KPSNADIRGG GKAGNGIKRA ASGRAAASEQ 240 QKPLVAAAAA PPPPPEKGIP QPPEVTAAAA AAAVASPALT RQLEIERQLF SALRVKGHAE 300 LASQLEAQMV RPTQPRLPPP ERRARLAQLL EASGHQALAS GLRQFAEGAA NGVRPSAGYW 360 DGGEQGSKAG TASLEEASAC RSGLLDERDM GAGGSATATS GDATAQIKAQ LPPAAVMAAA 420 PSLAPNNRHQ RQQQRVRLAI QRRQRQQQQQ QQQQQQQEPQ ARQQQGQLEQ RQHRHQQLRQ 480 QEQQELHEQQ EQQELHEQQE QQEQQEQQEQ QEQQEQQEQQ EQQEQQEQQE QQERKQQQQQ 540 QQPLQQQQQQ QQQRSASAIG SPLQQQQQHQ HQHQHQHQHQ HHQQQQHQQQ QHQQHQHHHP 600 QQQHQQHQQH QQHQQHSRKR LLPPDSGALL ELPFGQAPLD DNPDRPGSPI LNVLPGSVVS 660 LQTLGVTSGV TSSEAAPDGP EPLQLPAAAP AHAAATAWAT AEALVAAAAA AGSAAGSAAG 720 AGAREQGRAL KRVRLELNGA IGGTAVERRA LPLLGFGKGG KGAQPAHKHA PGAATLAAAP 780 RVGAAGDGCG GGGDDEELPG SFLVGSFAGS LGNLLGSFEG STLSAGQLLG RHDSFEAGAA 840 AARGGPSGL

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MGHSGNPTAG SGKEGPMPSQ NRTPVKRLPS KPANRKKDAG AAVAPQATPA VRGGGAAKPP  60
RSGRAADAKQ EGKEKLLQEL RTTNYRPWTQ EEDASLREQV SLHGPQNWSH VAKALKGRNG  120
KSCRLRWVNQ LAPDLKQESF TPEEDTILLE AHKVLGNKWT AIAKLLPGRT DNAIKNRWHA  180
WLKKKFPQQA AAVAAASAAA GAAAGAAAAA KPSNADIRGG GKAGNGIKRA ASGRAAASEQ  240
QKPLVAAAAA PPPPPEKGIP QPPEVTAAAA AAAVASPALT RQLEIERQLF SALRVKGHAE  300
LASQLEAQMV RPTQPRLPPP ERRARLAQLL EASGHQALAS GLRQFAEGAA NGVRPSAGYW  360
DGGEQGSKAG TASLEEASAC RSGLLDERDM GAGGSATATS GDATAQIKAQ LPPAAVMAAA  420
PSLAPNNRHQ RQQQRVRLAI QRRQRQQQQQ QQQQQQQEPQ ARQQQGQLEQ RQHRHQQLRQ  480
QEQQELHEQQ EQQELHEQQE QQEQQEQQEQ QEQQEQQEQQ EQQEQQEQQE QQERKQQQQQ  540
QQPLQQQQQQ QQQRSASAIG SPLQQQQQHQ HQHQHQHQHQ HHQQQQHQQQ QHQQHQHHHP  600
QQQHQQHQQH QQHQQHSRKR LLPPDSGALL ELPFGQAPLD DNPDRPGSPI LNVLPGSVVS  660
LQTLGVTSGV TSSEAAPDGP EPLQLPAAAP AHAAATAWAT AEALVAAAAA AGSAAGSAAG  720
AGAREQGRAL KRVRLELNGA IGGTAVERRA LPLLGFGKGG KGAQPAHKHA PGAATLAAAP  780
RVGAAGDGCG GGGDDEELPG SFLVGSFAGS LGNLLGSFEG STLSAGQLLG RHDSFEAGAA  840
AARGGPSGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-33	87	185	9	107	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	326	ERRARLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013905143.1	0.0	Transforming protein Myb
TrEMBL	A0A0D2LI46	0.0	A0A0D2LI46_9CHLO; Transforming protein Myb

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.1	2e-37	myb domain protein 110

Link Out ? help Back to Top
Entrez Gene	25734706

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]