PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013905002.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family NF-YC
Protein Properties Length: 274aa    MW: 28741.4 Da    PI: 4.7753
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013905002.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC88.47.4e-282391162
           NF-YC  1 qlksfwekq...ieka....tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrs 62
                    q+++fw +    +e++    ++fknh+lPlarikki+k+dedv+misaeaPvl++kacelfileltl++
  XP_013905002.1 23 QVRAFWRSMqgeVEQVgndpAEFKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACELFILELTLKA 91
                    6788997654565554212267*********************************************86 PP
2NF-YC40.36.8e-131161536299
           NF-YC  62 swlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     +wlhae +krrtl++sdi+a+v++t + dfl di+p++
  XP_013905002.1 116 AWLHAERSKRRTLQRSDISAVVNSTYVLDFLQDIIPKE 153
                     8***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.67E-2441152IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-254391IPR009072Histone-fold
PfamPF008082.5E-144991IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.3E-9116152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQRYDAGSDD PSDAPSAGNE EEQVRAFWRS MQGEVEQVGN DPAEFKNHQL PLARIKKIMK  60
SDEDVRMISA EAPVLFAKAC ELFILELTLK ARPGGTCWLL LHLLLWLSLS VKWAGAWLHA  120
ERSKRRTLQR SDISAVVNST YVLDFLQDII PKEGDEPQGG GADGAGGSGH AGGVASGGGA  180
TPVSPDAAAA QAHAQAAAAA AAAAQPSMYY APYPSGMAVP VPMQQQQVDP MAFMAAQQMQ  240
QQWAAQAAAM QAAAAMGAGA GTPQLPTGDT GSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-3533152595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013905002.10.0Nuclear transcription factor Y subunit C-1
SwissprotQ9FMV51e-42NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D2K6M90.0A0A0D2K6M9_9CHLO; Nuclear transcription factor Y subunit C-1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-41nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]
  2. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  3. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  4. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  5. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  7. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]