PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904948.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 859aa    MW: 87649.1 Da    PI: 6.8929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904948.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.1e-112971448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      T++E   +v++ + +G++ W++Ia+ ++ gR+ +++k++++ yl
   XP_013904948.1 29 LTEWEVAVIVEGQRTYGNR-WTLIASLLP-GRCNNDIKNYFNLYL 71
                     69*****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-15175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-13168IPR009057Homeodomain-like
PROSITE profilePS5129412.5071875IPR017930Myb domain
SMARTSM007171.9E-82573IPR001005SANT/Myb domain
CDDcd001672.56E-73071No hitNo description
PfamPF002499.7E-93071IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.510.103.8E-4473518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MPGRTSKSCS LRWRCFLNPE LKRPCDDPLT EWEVAVIVEG QRTYGNRWTL IASLLPGRCN  60
NDIKNYFNLY LKCQVPSGSV RNAYLERRLT LQDLLREAPP EVRQKEAATA AQLCPIIHSQ  120
HHGSTSSPQA CSSSHYDGLD FSGSPQDSII PTMGGGSGMP AFGMPAFGGS YAPTYSTVAA  180
ATTTTCSAGN TGQAKRKLGA DAPSAAATLT MVGLPLLPHL AYDVGHGDAG SDYGAGALAS  240
SVGGPRHGGC SGGGDCAGMD GMPPSGELDS LVAYTLPAPA DAQAQGRALG AALAMNLGVK  300
SHSFCVGGHP SLTISTSRAA LHSVHGEGAS PFAAVAGAQG GGVELPDPEL FGPSYPPLGD  360
LLSDGDDDGA LGTQRSSGRR IKRHKSAPAS AALPDLDTTG SPSLMAAAGA WMDALIAGGP  420
GASLSLDDAV ALAAAVKGAA APVGTGCAPV TTAAASAVST PAAPLQLPLG LQKQQQQQQQ  480
QPEHQQQQQQ QHHHHHQHHH QQHQQQQQQQ QQQRQQQQAH VNNHRPHALD LGVHSAPQMG  540
ATCSPSPSPS PAPMSTLRGA GTGAVVGAGA GCDGPLLRSV LTGAIADVER DMSALGGAGA  600
FGPASATAAS WVPSASPHAA PSSYSAPAPL FGGCIAGRSN LGLGLGLLPA YADSGSAAPT  660
PRNIAQHSAG GSPSTAAAGQ HHNGRSKAGD GGSDGGSGSG QLSHATGRER SSIASGATTD  720
GMYAFGGAAC YGGGSQSPVG VSSQNPFQQQ PSVFQQQHQQ QQQQQRQQQQ QQQQQQQPHS  780
HQQPQLHLRK PASSPAFSPA QGQVQARLGS AMSLDGLGVA IVGAGSVGCG DLLLDPSWGE  840
DLELPPQHME LLEDMLRAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904948.10.0Myb-related protein B
TrEMBLA0A0D2LHE90.0A0A0D2LHE9_9CHLO; Myb-related protein B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.14e-15myb domain protein 99
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]