PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013904948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 859aa MW: 87649.1 Da PI: 6.8929 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.1e-11 | 29 | 71 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E +v++ + +G++ W++Ia+ ++ gR+ +++k++++ yl XP_013904948.1 29 LTEWEVAVIVEGQRTYGNR-WTLIASLLP-GRCNNDIKNYFNLYL 71 69*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.81E-15 | 1 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 1 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.507 | 18 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-8 | 25 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-7 | 30 | 71 | No hit | No description |
Pfam | PF00249 | 9.7E-9 | 30 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.510.10 | 3.8E-4 | 473 | 518 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MPGRTSKSCS LRWRCFLNPE LKRPCDDPLT EWEVAVIVEG QRTYGNRWTL IASLLPGRCN 60 NDIKNYFNLY LKCQVPSGSV RNAYLERRLT LQDLLREAPP EVRQKEAATA AQLCPIIHSQ 120 HHGSTSSPQA CSSSHYDGLD FSGSPQDSII PTMGGGSGMP AFGMPAFGGS YAPTYSTVAA 180 ATTTTCSAGN TGQAKRKLGA DAPSAAATLT MVGLPLLPHL AYDVGHGDAG SDYGAGALAS 240 SVGGPRHGGC SGGGDCAGMD GMPPSGELDS LVAYTLPAPA DAQAQGRALG AALAMNLGVK 300 SHSFCVGGHP SLTISTSRAA LHSVHGEGAS PFAAVAGAQG GGVELPDPEL FGPSYPPLGD 360 LLSDGDDDGA LGTQRSSGRR IKRHKSAPAS AALPDLDTTG SPSLMAAAGA WMDALIAGGP 420 GASLSLDDAV ALAAAVKGAA APVGTGCAPV TTAAASAVST PAAPLQLPLG LQKQQQQQQQ 480 QPEHQQQQQQ QHHHHHQHHH QQHQQQQQQQ QQQRQQQQAH VNNHRPHALD LGVHSAPQMG 540 ATCSPSPSPS PAPMSTLRGA GTGAVVGAGA GCDGPLLRSV LTGAIADVER DMSALGGAGA 600 FGPASATAAS WVPSASPHAA PSSYSAPAPL FGGCIAGRSN LGLGLGLLPA YADSGSAAPT 660 PRNIAQHSAG GSPSTAAAGQ HHNGRSKAGD GGSDGGSGSG QLSHATGRER SSIASGATTD 720 GMYAFGGAAC YGGGSQSPVG VSSQNPFQQQ PSVFQQQHQQ QQQQQRQQQQ QQQQQQQPHS 780 HQQPQLHLRK PASSPAFSPA QGQVQARLGS AMSLDGLGVA IVGAGSVGCG DLLLDPSWGE 840 DLELPPQHME LLEDMLRAA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013904948.1 | 0.0 | Myb-related protein B | ||||
TrEMBL | A0A0D2LHE9 | 0.0 | A0A0D2LHE9_9CHLO; Myb-related protein B |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62320.1 | 4e-15 | myb domain protein 99 |
Link Out ? help Back to Top | |
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Entrez Gene | 25734899 |
Publications ? help Back to Top | |||
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