PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904858.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 510aa    MW: 52943.6 Da    PI: 6.6156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904858.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152971145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +WT  E++ll ++++++G++ W+ I++ m+ gRt++ +k++w+
   XP_013904858.1 29 KTPWTLAEEQLLMQLHRRYGNR-WSEISKIMP-GRTENAIKNFWN 71
                     579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.797123IPR017877Myb-like domain
SuperFamilySSF466891.3E-23981IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-10936IPR009057Homeodomain-like
PROSITE profilePS5129425.2372478IPR017930Myb domain
SMARTSM007176.8E-162876IPR001005SANT/Myb domain
PfamPF002491.7E-142971IPR001005SANT/Myb domain
CDDcd001671.40E-123174No hitNo description
Gene3DG3DSA:1.10.10.605.8E-183775IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MIGTHEDLGR VGKQCRERWN HHLRPDINKT PWTLAEEQLL MQLHRRYGNR WSEISKIMPG  60
RTENAIKNFW NATLRRKDTT RGNNRNEIGV GLALRAYMVD VGVALPTAPQ PEYLPPQRRG  120
PQHPRPAPAV PRGAAAAARE GQHLDDGETA GDEDDYEEGD CEYGGGDDSY NQQDDDEAEG  180
EAAGHAAPPE LSAFAAGHGI PAFRVPATKR RVSVTGGGTA DKGDSDAEWH PPNHGSPMVM  240
TSRGSVAGGV HAPPPLSPLA GAPFLPAIPS PTKRHRPSTG GTQAREEARV GSAAAATATA  300
AGAGAITAAA AAAAAAAPAG ESALSPISEG APRPSQGSPA PSSGTNTPLA LRRGSPSLVG  360
RGVGPSSDGG SAVSSGGSWQ APGSVPSATC APLFGGVGVN VSQADVIIAF VAALAQQHMQ  420
QQALHQAQQQ AARQQRLEVA ALQALAAQHL AQQQLFQEQR ARQQAARQSM KEEIGKGHCP  480
APPCASDDGG EVESDAQVAE MMLSLRNSGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-2997736104C-Myb DNA-Binding Domain
1msf_C7e-2997736104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904858.10.0Myb proto-oncoprotein
TrEMBLA0A0D2LH600.0A0A0D2LH60_9CHLO; Myb proto-oncoprotein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-27myb domain protein 118
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]