PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013904855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB | ||||||||
Protein Properties | Length: 583aa MW: 61309.2 Da PI: 7.0336 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 16 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g W eEde l +v+ G g+W+ Iar ++ +gR +kqc++rw+ +l XP_013904855.1 16 KGGWRHEEDEALTTLVTHKGEGNWSEIARDLNrmvcgheeLGRVGKQCRERWNHHL 71 678*************************************************9886 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.9e-15 | 77 | 119 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT E++ll + ++++G++ W+ I++ m+ gRt++ +k++w+ XP_013904855.1 77 KTPWTLAEEQLLMQSHRRYGNR-WSEISKLMP-GRTENAIKNFWN 119 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.683 | 11 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-26 | 13 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-9 | 15 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 18 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.9E-15 | 19 | 88 | No hit | No description |
CDD | cd00167 | 8.45E-9 | 19 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.914 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.72E-12 | 79 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 81 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MSYAGGGRRE QPPMLKGGWR HEEDEALTTL VTHKGEGNWS EIARDLNRMV CGHEELGRVG 60 KQCRERWNHH LRPDINKTPW TLAEEQLLMQ SHRRYGNRWS EISKLMPGRT ENAIKNFWNA 120 TLRRKDITRG NNRNEIGVGL ALRAYMVDVG VALPTAPQPE YLPPQRRGPQ RPCPAPAAPR 180 WAATAARDGR RPDDGATAGG EDDYEEGDYE YGGGDDGYNK QDDDEAEDEA AGHAAAPELS 240 AFAAGHGIPA FRVPATKRRV SATGGGGSGG APDEGDSEAE WNPQHTGSPM AKAPLGAAAS 300 SGVHAPPPLS PLAGVPFLPA IPSPTKRPKP TAAGAHAHAI AHAAAAELRL SFPASEGAPR 360 PSQGSPAPSS GANTPLSLRR GSPPGAGLGV GLGSDGGSAA STGGAFQAGA GAPSAPIAPL 420 FSGVGLNVSQ ADLIAAFVAA LAQQAKAAQH TQQAPAAAQH AQLQQLQQHQ LMQQQALHQA 480 QQQAARQQRL EVAALQALAA QHLAQQQLFQ EQRARQQAAA QEQERVLMLQ LQQAARLAAM 540 GPGVKQDRGK PAAAVRGASD DEGEVESDAQ VAEMMLMLRN SGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-35 | 12 | 125 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-35 | 12 | 125 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013904855.1 | 0.0 | Myb proto-oncoprotein | ||||
TrEMBL | A0A0D2NMI3 | 0.0 | A0A0D2NMI3_9CHLO; Myb proto-oncoprotein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-35 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
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Entrez Gene | 25734991 |
Publications ? help Back to Top | |||
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