PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013904790.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

AP2

Protein Properties

Length: 486aa MW: 48769 Da PI: 8.2635

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013904790.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24.1	8.9e-08	31	81	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s ykG wdk g W+++ +s + k+++lg++ ++ Aa+ ++ a++ l+ge XP_013904790.1 31 SFYKGLAWDKHEGCWRVR---VSL---SgKQHHLGRHANEDHAAQVYDCAALLLFGE 81 67************99...544...34******99********999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.21E-10	31	89	IPR016177	DNA-binding domain
PROSITE profile	PS51032	9.993	32	88	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-6	33	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MQQGARPPGG KAAASHRSDT KRKAPRNQPT SFYKGLAWDK HEGCWRVRVS LSGKQHHLGR 60 HANEDHAAQV YDCAALLLFG EAAAFNFSYQ RAVEALAYID QLPFMANIRR LAPISEHNPP 120 PPGGAAAGAG PASGAGPAAG AGAVRRFSPG VVVKQEAGAV DAALDPAAPC AKRARTAPPA 180 ACAVRVGTAP AAVTHSSAAV GMALPTSCGA PSGIPMSGGS GMIGFRLLAG CHSLPAWDAA 240 PVGGSNTCAT LGAAQPAAGR AVRRTAALRT AGCVKGAESA ATVAAPAMPQ PHPELQPNNG 300 DGQSADSSDS TACWSATGAV ASDGSGGWPA AAQQAPQAQA ASAPALPARA LAPPPLFVQV 360 VEPAGSQPRQ LPQPAPLPQP QQPQQQNRPV SARALLPLPS PLGLPPLLPT PRLLATLGAG 420 SASPWDPCGA ADGCLSGCPD LWPQPLDGLG ALPPGGAGVG ASDGYRGSPA SHMAVVTQFD 480 EWCDEF

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MQQGARPPGG KAAASHRSDT KRKAPRNQPT SFYKGLAWDK HEGCWRVRVS LSGKQHHLGR  60
HANEDHAAQV YDCAALLLFG EAAAFNFSYQ RAVEALAYID QLPFMANIRR LAPISEHNPP  120
PPGGAAAGAG PASGAGPAAG AGAVRRFSPG VVVKQEAGAV DAALDPAAPC AKRARTAPPA  180
ACAVRVGTAP AAVTHSSAAV GMALPTSCGA PSGIPMSGGS GMIGFRLLAG CHSLPAWDAA  240
PVGGSNTCAT LGAAQPAAGR AVRRTAALRT AGCVKGAESA ATVAAPAMPQ PHPELQPNNG  300
DGQSADSSDS TACWSATGAV ASDGSGGWPA AAQQAPQAQA ASAPALPARA LAPPPLFVQV  360
VEPAGSQPRQ LPQPAPLPQP QQPQQQNRPV SARALLPLPS PLGLPPLLPT PRLLATLGAG  420
SASPWDPCGA ADGCLSGCPD LWPQPLDGLG ALPPGGAGVG ASDGYRGSPA SHMAVVTQFD  480
EWCDEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013904790.1	0.0	hypothetical protein MNEG_2182
TrEMBL	A0A0D2NMB7	0.0	A0A0D2NMB7_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25735060

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]