PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013904757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 27014.5 Da PI: 9.6091 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.7e-17 | 25 | 117 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt+sdv++sgr+v+pk ae++ +++++ ++ l +ed +g++++++ ++ +++s++y+l+ G+ + + +Lk gD+++F +g++++ XP_013904757.1 25 FEKQLTSSDVSASGRVVVPKAMAEQYfpKLDNPAGISLEVEDAHGETYTLRWRFwiNNQSRMYLLE-GTADLQHRYHLKMGDVLIFAQKGDKDK 117 99**************************88888999*********999999988656666667776.********************8877554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.9E-26 | 22 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-20 | 23 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.47E-20 | 24 | 121 | No hit | No description |
SMART | SM01019 | 6.8E-14 | 25 | 127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 25 | 117 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.924 | 25 | 125 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAAEAEAQAA AVLEQLQRVG AKVFFEKQLT SSDVSASGRV VVPKAMAEQY FPKLDNPAGI 60 SLEVEDAHGE TYTLRWRFWI NNQSRMYLLE GTADLQHRYH LKMGDVLIFA QKGDKDKAVV 120 LAGRPATRAD AMRKAAAAAR KPSPTPAGGG GGKGGAGRNK DKAIKERNRR AAMRRHGVNP 180 EDVEPPADGV FRAVPSDSMA DAPNAVSQVR AGRWLASLNL AGELYQAFFP NEDQAAEAIL 240 LSGFTQPDVS A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-22 | 24 | 133 | 23 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 169 | RNKDKAIKERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013904757.1 | 0.0 | hypothetical protein MNEG_2226 | ||||
TrEMBL | A0A0D2K5W5 | 0.0 | A0A0D2K5W5_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4113 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-20 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 25735104 |
Publications ? help Back to Top | |||
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