PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013904600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26201.1 Da PI: 9.4248 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 94 | 139 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rWT+eE+ +l +v+q+G++ +W++Ia+ + gR++kqc++rw++++ XP_013904600.1 94 RWTAEEHARLESLVRQYGTErNWALIAEGIS-GRSGKQCRERWLNHM 139 8******************************.*************96 PP | |||||||
2 | Myb_DNA-binding | 23.6 | 1.2e-07 | 145 | 187 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+W ++E+ l+ ++++ G+ W+ ++ gRt++++k++w+ XP_013904600.1 145 KGNWLADEEFHLALCHTLVGNQ-WSQHCTRLR-GRTENSIKNYWN 187 79******************99.***999999.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.384 | 87 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 91 | 141 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.14E-21 | 93 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-16 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-13 | 94 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 94 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.649 | 144 | 194 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0012 | 144 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-6 | 145 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 146 | 193 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEVAGRPSTA SDDCEYLPPI AGYAAALPHI PIRRGVPRSG GGGDSDFEYE GSDSDYSDDS 60 TSAAGARRRR KAAPSMGIRK PSSGGAGGTR VLHRWTAEEH ARLESLVRQY GTERNWALIA 120 EGISGRSGKQ CRERWLNHMR DGIIKGNWLA DEEFHLALCH TLVGNQWSQH CTRLRGRTEN 180 SIKNYWNATL RSKQANKRRG FLWSYIDKVR GALDDEGLRH RAFADTMDHS LTHAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 95 | 193 | 10 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013904600.1 | 1e-174 | Myb-related protein A | ||||
TrEMBL | A0A0D2NLJ3 | 1e-173 | A0A0D2NLJ3_9CHLO; Myb-related protein A |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 3e-30 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Entrez Gene | 25735256 |
Publications ? help Back to Top | |||
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