PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904393.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 277aa    MW: 30009.4 Da    PI: 9.3608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904393.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07176198426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      lC+f+  +G+C  Gd C++aH+
  XP_013904393.1 176 QLCKFYVNSGQCLKGDACPYAHV 198
                     59********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-4172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6173199IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4176198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5176197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQPRQETIV GQQLPSLQAA AEERWVEVIV KASHFDRVLE ARDSIRVGDV VSFEGRYQDD  60
ESSILTCLGF EVLQRWREVS GGASFAPRVP PRRQHGKHAA RNGHGAVGED QQARQQQQQN  120
SEKAQQQKQQ QRAEQQQEQR ATPNSGTTTA AEAPGAVQPS PAPATAAAVV AAPQLQLCKF  180
YVNSGQCLKG DACPYAHVAA AARGAVLQSW VRRRTAERRA NAEREGCCHV AGAASKRYRA  240
RVFARWLVGT FGRDALNQGA GVLDIAAQGA EVARPGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904393.10.0hypothetical protein MNEG_2591
TrEMBLA0A0D2LFF60.0A0A0D2LFF6_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP348811
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]