PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013903993.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 188aa MW: 20289.8 Da PI: 6.2248

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013903993.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	3	46	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W+++Ede+l++ +++G+ W++Ia+ +g gRt++ +k+r+ + XP_013903993.1 3 RGKWSKQEDEQLLRHYRKWGNS-WTKIAQFIG-GRTDNAVKNRFVT 46 89****************99.*****.********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.754	1	52	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-17	2	50	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-14	2	50	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-15	3	46	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.18E-15	3	50	IPR009057	Homeodomain-like
CDD	cd00167	6.21E-13	5	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MRRGKWSKQE DEQLLRHYRK WGNSWTKIAQ FIGGRTDNAV KNRFVTLCEM GLVHRKPGRS 60 ARRGSHDDDY DSSCSMEYEE DEEADGDEDG SRGGGRGACE GVYGDDEGYE SCHDTFTGGT 120 ESEYAMEDEG GAAARSHSPM RAPHGARFGA HAPSSSGTSC GTAHHHGGAG AAAHSRLGSP 180 MRHDAAPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013903993.1	1e-135	hypothetical protein MNEG_2990
TrEMBL	A0A0D2LE32	1e-134	A0A0D2LE32_9CHLO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	7e-14	myb domain protein 88

Link Out ? help Back to Top
Entrez Gene	25735868

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]