PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013903818.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 563aa    MW: 57343.1 Da    PI: 6.7927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013903818.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09440482344
                      SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrw 44 
                      +W ++E +ll ++v+q+G + +W++Ia+ +g+gR +  c  ++
   XP_013903818.1 440 PWGPQERQLLMQLVQQHGRNgQWEAIAAALGTGRPASACLRFF 482
                      8*****************99***************99997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071715191435IPR001005SANT/Myb domain
PROSITE profilePS500905.564390429IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4395430IPR009057Homeodomain-like
PROSITE profilePS500907.735433486IPR017877Myb-like domain
SMARTSM007172.4E-5437488IPR001005SANT/Myb domain
SuperFamilySSF466891.02E-8438531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-9438486IPR009057Homeodomain-like
PfamPF002496.6E-8439483IPR001005SANT/Myb domain
CDDcd001671.08E-5440482No hitNo description
SMARTSM0071718498538IPR001005SANT/Myb domain
PROSITE profilePS500904.716502542IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MRAAAGHVNP GESSNPPDEP HYAEAAPRAP PPSAGRGGAG AAADAAAAGA NSAAAAPARR  60
GGGGAGGERD DHGGFDADGE DELQGPYETE VDEDEEDEED SDDLALDLDL GLFHSQIDEA  120
IRGTQRAAAP AGPAAARAFP CGRRGRRRRR RSRGLGWGSG SDEGASEDIG GSEGETDSSD  180
GGSGSSSSSL GLSDLDSDEE VAAALGARRH GHAGGVGSAV AWPRGLGPMG GAGRRGGRGA  240
RGAGGGGSDS GGESGGHTGA PNPLRSRHWV GTFNTGGTAA PAPAPGPAPV LSEPGASGAE  300
GAGEAVPAGD PGLQMGAFAL RFLPPNSEAR EVAEKLPFLQ KMLDGQLGRR IRTTHACVQA  360
LERRPDSQLA AGLEEFKAKT QALAQLDASS REASARIQQA AAELTPHEWR AVAVAVGRGR  420
TGPECKEHWL AARSEGATRP WGPQERQLLM QLVQQHGRNG QWEAIAAALG TGRPASACLR  480
FFATQLGGAA AAAAAAAAAP VFTPQMDDEL RRLVEAVGPR WRLIGQRMGL RAKQVGGRCK  540
RRPCCGRPAG VGRCSALGRR GRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149RRGRRRRR
2142150RRGRRRRRR
3143150RGRRRRRR
4145152RRRRRRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013903818.10.0hypothetical protein MNEG_3152
TrEMBLA0A0D2LDL70.0A0A0D2LDL7_9CHLO; Uncharacterized protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]