PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013903778.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

bHLH

Protein Properties

Length: 348aa MW: 37219.2 Da PI: 6.0651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013903778.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.3e-13	67	115	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ rE+ RR++iN++f eL +l+ ++ + +K +K ++L++A++ +++Lq XP_013903778.1 67 NKASREKARREKINDRFVELAQLVEPN---KEPKTDKLTVLQEAIRTVQQLQ 115 5678*********************...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-15	62	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.24	63	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.25E-9	66	119	No hit	No description
Pfam	PF00010	5.7E-11	67	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-14	68	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MPAVAPLAQQ DLDAAALAGA TTSSGKGRKR TKQLDDVDSD ELSDEDEEGG RRCGKKGRAP 60 GSDAARNKAS REKARREKIN DRFVELAQLV EPNKEPKTDK LTVLQEAIRT VQQLQVENHQ 120 LKQLNKFLEE KAANLERDRA QAMFFQMQSG VLQQQGGGMA GGGMAAGGMG GGGMMMQQPV 180 GGMMMGPPGM MGMMQPAGMM TQQQQVVPPD VQALSRAPSG STQPAKLLQQ DQQQTAQQQQ 240 QPQPPQQQQP SQQQPQLQQQ QSLAQPLPSM WQQQPAGPDP QAAAQQQVML PPGFAPPVDS 300 KAMMAAAGGA MMSSGGMGQG GMPMYWQSMV PPTMLDANQD SLLRPPAA

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MPAVAPLAQQ DLDAAALAGA TTSSGKGRKR TKQLDDVDSD ELSDEDEEGG RRCGKKGRAP  60
GSDAARNKAS REKARREKIN DRFVELAQLV EPNKEPKTDK LTVLQEAIRT VQQLQVENHQ  120
LKQLNKFLEE KAANLERDRA QAMFFQMQSG VLQQQGGGMA GGGMAAGGMG GGGMMMQQPV  180
GGMMMGPPGM MGMMQPAGMM TQQQQVVPPD VQALSRAPSG STQPAKLLQQ DQQQTAQQQQ  240
QPQPPQQQQP SQQQPQLQQQ QSLAQPLPSM WQQQPAGPDP QAAAQQQVML PPGFAPPVDS  300
KAMMAAAGGA MMSSGGMGQG GMPMYWQSMV PPTMLDANQD SLLRPPAA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013903778.1	0.0	Transcription factor bHLH34
TrEMBL	A0A0D2LDH8	0.0	A0A0D2LDH8_9CHLO; Transcription factor bHLH34

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5649	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-16	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	25736080

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]