PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013903606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB | ||||||||
Protein Properties | Length: 908aa MW: 92981.5 Da PI: 6.9782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 12 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r++WT+eEd +l++ v++ G ++W +Ia++++ gRt+k c +rw++yl XP_013903606.1 12 RLPWTPEEDAILIQMVEKIGEKRWPLIAAKLP-GRTGKGCSHRWRTYL 58 89******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 21.4 | 5.9e-07 | 69 | 110 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T++E +v++ k++ ++ W Ia+ + gR+ +k++w+ XP_013903606.1 69 PFTEWEAAVIVQGQKEHANN-WLYIAKLLLPGRSNTAVKNYWH 110 79****************99.*******999***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.572 | 7 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 11 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.5E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-15 | 12 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-21 | 14 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-14 | 14 | 58 | No hit | No description |
SMART | SM00717 | 9.9E-4 | 66 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.284 | 69 | 113 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 74 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
MGKASVDSHQ TRLPWTPEED AILIQMVEKI GEKRWPLIAA KLPGRTGKGC SHRWRTYLRP 60 DVKHPHLEPF TEWEAAVIVQ GQKEHANNWL YIAKLLLPGR SNTAVKNYWH CRLKAGVGLK 120 SNSFLQKALG LDQLLNDVPQ AMRTFPIAQP PFPSVAPSKV MAQRIDPKTG LALPSGPLAN 180 KGSGTFHISV AQVGKPMTGP PPGLAGTDLK AAASQYVQRH LASLGAGCAP SAPAPAAGAS 240 QLPAPSAGAG RAGGPARLSS ADAPLILPPG ALAGSGSGGA GDDSGLSAAA CHEQPHCGGD 300 GGLGGMGPCM GLPLGMGMGM GVGVDFCNRQ SLPPMFGIPG FDMSGGGPGV KGAPESPRPC 360 SSGAADDTAA HSHGRAARGG AAAQLGGWEG GEGYMGDEEC CEEERMSEDL EDMLQSMQED 420 EEAAGGAAGD LDARAGGGAA LLGFMDDSTA AAAAALARCS GPAGSRHSYS SAASGVQLGS 480 ACGSPAGPAS APISPSRSPG SSPLLPQPFF AAGAGLGLGP AAPHLGHAPA HHVHHPSPLS 540 RARAVSPFAV CQGGGDVLEY GRVGSCPSLG AAAAEGDGCH QQPQLLHGGS RLRHLLPARP 600 ASASPSLGAR TESWEREVEA VGGGGGKALE QLAGQQQQQQ QQQQQQQQQQ QQQQQQQQAA 660 QQQQRQQQQQ QQQEWHQDLE QQQHLHRHQQ QQQQQQQQQQ QQQQQQQQQQ QHVIAQRHVS 720 EHGRVCSSPA ALDSAGGPAA AAPSAIAHSS GGGSSGGHLG VDPGCEPIHL HHLRIRLAGV 780 AASAAQQADE AANGATPVAS ASPNVAGLCM LGLGTPSGTP HHAQHAAQRQ QQLVPVSGGA 840 FGGVAAAAAR AYAGVPSGVP SGGPQLFPRQ VSLGVQDSLP FEWEPFGGAA SMARHSNDDG 900 GAFEALLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-24 | 14 | 117 | 6 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-24 | 14 | 117 | 6 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013903606.1 | 0.0 | Myb-related protein A | ||||
TrEMBL | A0A0D2MVR8 | 0.0 | A0A0D2MVR8_9CHLO; Myb-related protein A |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-23 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Entrez Gene | 25736255 |
Publications ? help Back to Top | |||
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