PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013903570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 279aa MW: 28492.1 Da PI: 11.6507 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3.1e-15 | 173 | 239 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse....ng......kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ykGV++++++grW+A+I+d s +g r k+ +lg+++t+ +Aa+ +++a++++++ XP_013903570.1 173 SSYKGVTRHRRTGRWEAHIWDgASPaagsDGvaakpgGRgKQLYLGSYDTELDAARVYDRAALAFFK 239 67*******************5555965444998887336**********99**********98865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-8 | 173 | 237 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.67E-14 | 173 | 245 | No hit | No description |
SuperFamily | SSF54171 | 6.21E-12 | 173 | 246 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.517 | 174 | 247 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-15 | 174 | 246 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-19 | 174 | 251 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MEKRALAIGG ESAAAEGDAP AAEDQPLVAA APPDPNDWLP PPPNVPPSPA LMQSAATTAL 60 QRLLGPSAAV RSAPPSTVTA GLPPAHPGAR ALVLPPGLMQ QVTAVAASRT APPTPAASAG 120 AATAAVAADA PPGADPSAPP GRVTARQSRG SKARAPSAVQ RMQRRKNASP STSSYKGVTR 180 HRRTGRWEAH IWDGASPAAG SDGVAAKPGG RGKQLYLGSY DTELDAARVY DRAALAFFKR 240 KAVLNVSSNP LTPARPPPDW RLSQMNPAGR AATQQRARA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013903570.1 | 0.0 | AP2-like ethylene-responsive transcription factor | ||||
TrEMBL | A0A0D2NHU7 | 0.0 | A0A0D2NHU7_9CHLO; AP2-like ethylene-responsive transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 4e-16 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 25736291 |
Publications ? help Back to Top | |||
---|---|---|---|
|